We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXC6
(GeneCards)
ModelHXC6_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
D
Motif rank
0
ConsensusWTGATTTATTWCTTT
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words7
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX6-7 {3.1.1.6}
HGNCHGNC:5128
EntrezGeneGeneID:3223
(SSTAR profile)
UniProt IDHXC6_HUMAN
UniProt ACP09630
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.43871
0.0005 6.2135
0.0001 8.312930000000001
GTEx tissue expression atlas HOXC6 expression
ReMap ChIP-seq dataset list HOXC6 datasets
Motifs in JASPAR
PCM
ACGT
014.6380.1461.0211.196
020.00.00.07.0
030.00.07.00.0
047.00.00.00.0
050.00.00.07.0
060.00.00.07.0
070.00.01.055.95
087.00.00.00.0
090.00.00.07.0
100.00.01.055.95
115.0750.5830.2921.05
120.05.3671.050.583
131.050.00.05.95
140.00.00.07.0
150.1460.1461.1965.513
PWM
ACGT
010.829-1.263-0.395-0.285
02-1.525-1.525-1.5251.208
03-1.525-1.5251.208-1.525
041.208-1.525-1.525-1.525
05-1.525-1.525-1.5251.208
06-1.525-1.525-1.5251.208
07-1.525-1.525-0.3751.057
081.208-1.525-1.525-1.525
09-1.525-1.525-1.5251.208
10-1.525-1.525-0.3751.057
110.911-0.737-1.056-0.375
12-1.5250.962-0.375-0.737
13-0.375-1.525-1.5251.057
14-1.525-1.525-1.5251.208
15-1.263-1.263-0.2850.987