Model info
| Transcription factor | HOXC8 (GeneCards) | ||||||||
| Model | HXC8_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nTTSATTRAnKSnn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 9 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX8 {3.1.1.7} | ||||||||
| HGNC | HGNC:5129 | ||||||||
| EntrezGene | GeneID:3224 (SSTAR profile) | ||||||||
| UniProt ID | HXC8_HUMAN | ||||||||
| UniProt AC | P31273 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HOXC8 expression | ||||||||
| ReMap ChIP-seq dataset list | HOXC8 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.492 | 2.503 | 1.492 | 3.514 |
| 02 | 0.0 | 0.0 | 2.022 | 6.978 |
| 03 | 0.0 | 1.011 | 0.0 | 7.989 |
| 04 | 0.91 | 3.034 | 5.056 | 0.0 |
| 05 | 8.09 | 0.0 | 0.0 | 0.91 |
| 06 | 2.022 | 0.0 | 0.0 | 6.978 |
| 07 | 1.921 | 0.0 | 0.0 | 7.079 |
| 08 | 3.944 | 0.0 | 4.045 | 1.011 |
| 09 | 9.0 | 0.0 | 0.0 | 0.0 |
| 10 | 1.011 | 1.011 | 1.011 | 5.966 |
| 11 | 2.022 | 0.0 | 4.045 | 2.933 |
| 12 | 1.921 | 4.045 | 3.034 | 0.0 |
| 13 | 1.011 | 3.944 | 3.034 | 1.011 |
| 14 | 1.517 | 4.449 | 1.517 | 1.517 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.316 | 0.086 | -0.316 | 0.373 |
| 02 | -1.628 | -1.628 | -0.085 | 0.989 |
| 03 | -1.628 | -0.584 | -1.628 | 1.115 |
| 04 | -0.651 | 0.247 | 0.694 | -1.628 |
| 05 | 1.127 | -1.628 | -1.628 | -0.651 |
| 06 | -0.085 | -1.628 | -1.628 | 0.989 |
| 07 | -0.125 | -1.628 | -1.628 | 1.002 |
| 08 | 0.473 | -1.628 | 0.495 | -0.584 |
| 09 | 1.227 | -1.628 | -1.628 | -1.628 |
| 10 | -0.584 | -0.584 | -0.584 | 0.845 |
| 11 | -0.085 | -1.628 | 0.495 | 0.218 |
| 12 | -0.125 | 0.495 | 0.247 | -1.628 |
| 13 | -0.584 | 0.473 | 0.247 | -0.584 |
| 14 | -0.304 | 0.58 | -0.304 | -0.304 |