We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXC9
(GeneCards)
ModelHXC9_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusnWTTWATKRShn
Best auROC (human)0.877
Best auROC (mouse)
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)
Aligned words503
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5130
EntrezGeneGeneID:3225
(SSTAR profile)
UniProt IDHXC9_HUMAN
UniProt ACP31274
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.186770000000001
0.0005 13.12501
0.0001 16.807915
GTEx tissue expression atlas HOXC9 expression
ReMap ChIP-seq dataset list HOXC9 datasets
Motifs in JASPAR
MA0485.1 (Hoxc9; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0126.014.010.091.029.011.01.053.028.018.02.047.024.021.013.0112.0
028.00.05.094.02.02.01.059.00.00.02.024.06.06.07.0284.0
030.00.00.016.00.00.00.08.00.00.00.015.02.00.03.0456.0
041.00.00.01.00.00.00.00.01.00.01.01.098.030.01.0366.0
05100.00.00.00.029.01.00.00.02.00.00.00.0360.03.04.01.0
063.013.02.0473.00.01.00.03.00.00.00.04.00.00.00.01.0
070.00.03.00.03.00.03.08.00.00.00.02.031.01.0206.0243.0
085.03.025.01.00.01.00.00.040.05.0148.019.076.02.0163.012.0
092.097.018.04.01.08.02.00.013.0234.055.034.00.020.05.07.0
101.08.01.06.0107.0131.03.0118.011.052.04.013.05.013.03.024.0
1123.023.046.032.085.047.07.065.03.06.02.00.024.032.054.051.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.181-0.788-1.1141.061-0.074-1.022-3.1260.523-0.108-0.543-2.5840.404-0.26-0.392-0.861.268
02-1.328-4.4-1.771.093-2.584-2.584-3.1260.63-4.4-4.4-2.584-0.26-1.6-1.6-1.4542.196
03-4.4-4.4-4.4-0.658-4.4-4.4-4.4-1.328-4.4-4.4-4.4-0.721-2.584-4.4-2.2342.669
04-3.126-4.4-4.4-3.126-4.4-4.4-4.4-4.4-3.126-4.4-3.126-3.1261.135-0.04-3.1262.449
051.155-4.4-4.4-4.4-0.074-3.126-4.4-4.4-2.584-4.4-4.4-4.42.433-2.234-1.975-3.126
06-2.234-0.86-2.5842.706-4.4-3.126-4.4-2.234-4.4-4.4-4.4-1.975-4.4-4.4-4.4-3.126
07-4.4-4.4-2.234-4.4-2.234-4.4-2.234-1.328-4.4-4.4-4.4-2.584-0.008-3.1261.8752.04
08-1.77-2.234-0.22-3.126-4.4-3.126-4.4-4.40.244-1.771.545-0.490.881-2.5841.642-0.938
09-2.5841.124-0.543-1.975-3.126-1.328-2.584-4.4-0.862.0030.560.083-4.4-0.439-1.77-1.454
10-3.126-1.328-3.126-1.61.2221.424-2.2341.32-1.0220.504-1.975-0.86-1.77-0.86-2.234-0.26
11-0.302-0.3020.3830.0230.9930.404-1.4540.726-2.234-1.6-2.584-4.4-0.260.0230.5420.485