Model info
| Transcription factor | HOXC9 (GeneCards) | ||||||||
| Model | HXC9_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hTTWATKGSh | ||||||||
| Best auROC (human) | 0.871 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| HGNC | HGNC:5130 | ||||||||
| EntrezGene | GeneID:3225 (SSTAR profile) | ||||||||
| UniProt ID | HXC9_HUMAN | ||||||||
| UniProt AC | P31274 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HOXC9 expression | ||||||||
| ReMap ChIP-seq dataset list | HOXC9 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 130.0 | 78.0 | 37.0 | 255.0 |
| 02 | 20.0 | 14.0 | 23.0 | 443.0 |
| 03 | 4.0 | 6.0 | 8.0 | 482.0 |
| 04 | 112.0 | 63.0 | 16.0 | 309.0 |
| 05 | 480.0 | 12.0 | 6.0 | 2.0 |
| 06 | 6.0 | 12.0 | 9.0 | 473.0 |
| 07 | 26.0 | 2.0 | 227.0 | 245.0 |
| 08 | 78.0 | 7.0 | 401.0 | 14.0 |
| 09 | 11.0 | 387.0 | 67.0 | 35.0 |
| 10 | 144.0 | 200.0 | 8.0 | 148.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.039 | -0.464 | -1.189 | 0.707 |
| 02 | -1.77 | -2.096 | -1.64 | 1.256 |
| 03 | -3.126 | -2.819 | -2.584 | 1.34 |
| 04 | -0.108 | -0.673 | -1.975 | 0.898 |
| 05 | 1.336 | -2.234 | -2.819 | -3.573 |
| 06 | -2.819 | -2.234 | -2.484 | 1.322 |
| 07 | -1.525 | -3.573 | 0.591 | 0.667 |
| 08 | -0.464 | -2.694 | 1.157 | -2.096 |
| 09 | -2.311 | 1.122 | -0.613 | -1.242 |
| 10 | 0.14 | 0.465 | -2.584 | 0.167 |