We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHoxc9
ModelHXC9_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnWRATTTAYdRbbn
Best auROC (human)
Best auROC (mouse)0.958
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)7
Aligned words500
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
MGIMGI:96199
EntrezGeneGeneID:15427
(SSTAR profile)
UniProt IDHXC9_MOUSE
UniProt ACP09633
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.28076
0.0005 12.046710000000001
0.0001 15.637625
GTEx tissue expression atlas Hoxc9 expression
Motifs in JASPAR
MA0485.1 (Hoxc9; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0144.09.019.069.036.01.01.074.037.04.010.0108.010.00.016.062.0
0223.04.083.017.07.01.06.00.013.00.026.07.055.06.0203.049.0
0384.03.00.011.07.01.00.03.0274.010.03.031.056.04.00.013.0
0412.04.04.0401.01.00.00.017.00.00.00.03.01.01.00.056.0
051.00.00.013.00.00.00.05.00.00.00.04.04.03.08.0462.0
060.00.00.05.00.00.00.03.01.00.03.04.031.08.024.0421.0
0732.00.00.00.08.00.00.00.027.00.00.00.0426.02.04.01.0
0822.0111.017.0343.00.00.00.02.00.01.01.02.00.00.00.01.0
094.00.06.012.047.02.023.040.00.00.08.010.044.010.0205.089.0
1017.04.065.09.08.02.01.01.056.014.0141.031.028.09.097.017.0
117.062.019.021.03.019.00.07.027.0177.044.056.05.024.015.014.0
126.09.017.010.056.0122.014.090.09.036.021.012.011.044.035.08.0
1311.023.033.015.059.061.018.073.018.028.019.022.013.033.045.029.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.339-1.215-0.490.7850.14-3.126-3.1260.8550.167-1.975-1.1141.231-1.114-4.4-0.6580.679
02-0.302-1.9750.969-0.599-1.454-3.126-1.6-4.4-0.86-4.4-0.181-1.4540.56-1.61.8610.445
030.981-2.234-4.4-1.022-1.454-3.126-4.4-2.2342.16-1.114-2.234-0.0080.578-1.975-4.4-0.86
04-0.938-1.975-1.9752.541-3.126-4.4-4.4-0.599-4.4-4.4-4.4-2.234-3.126-3.126-4.40.578
05-3.126-4.4-4.4-0.86-4.4-4.4-4.4-1.77-4.4-4.4-4.4-1.975-1.975-2.234-1.3282.682
06-4.4-4.4-4.4-1.77-4.4-4.4-4.4-2.234-3.126-4.4-2.234-1.975-0.008-1.328-0.262.589
070.023-4.4-4.4-4.4-1.328-4.4-4.4-4.4-0.144-4.4-4.4-4.42.601-2.584-1.975-3.126
08-0.3461.259-0.5992.384-4.4-4.4-4.4-2.584-4.4-3.126-3.126-2.584-4.4-4.4-4.4-3.126
09-1.975-4.4-1.6-0.9380.404-2.584-0.3020.244-4.4-4.4-1.328-1.1140.339-1.1141.8711.039
10-0.599-1.9750.726-1.215-1.328-2.584-3.126-3.1260.578-0.7881.497-0.008-0.108-1.2151.124-0.599
11-1.4540.679-0.49-0.392-2.234-0.49-4.4-1.454-0.1441.7240.3390.578-1.77-0.26-0.721-0.788
12-1.6-1.215-0.599-1.1140.5781.353-0.7881.05-1.2150.14-0.392-0.938-1.0220.3390.112-1.328
13-1.022-0.3020.054-0.7210.630.663-0.5430.841-0.543-0.108-0.49-0.346-0.860.0540.361-0.074