Model info
| Transcription factor | Hoxc9 | ||||||||
| Model | HXC9_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WRATTdAYdRbh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.955 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| MGI | MGI:96199 | ||||||||
| EntrezGene | GeneID:15427 (SSTAR profile) | ||||||||
| UniProt ID | HXC9_MOUSE | ||||||||
| UniProt AC | P09633 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxc9 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 125.0 | 9.0 | 56.0 | 310.0 |
| 02 | 92.0 | 3.0 | 351.0 | 54.0 |
| 03 | 411.0 | 23.0 | 8.0 | 58.0 |
| 04 | 11.0 | 5.0 | 10.0 | 474.0 |
| 05 | 8.0 | 3.0 | 11.0 | 478.0 |
| 06 | 42.0 | 23.0 | 42.0 | 393.0 |
| 07 | 481.0 | 7.0 | 10.0 | 2.0 |
| 08 | 20.0 | 91.0 | 19.0 | 370.0 |
| 09 | 85.0 | 16.0 | 234.0 | 165.0 |
| 10 | 104.0 | 27.0 | 322.0 | 47.0 |
| 11 | 38.0 | 281.0 | 80.0 | 101.0 |
| 12 | 97.0 | 207.0 | 60.0 | 136.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | -2.484 | -0.788 | 0.901 |
| 02 | -0.302 | -3.325 | 1.025 | -0.823 |
| 03 | 1.182 | -1.64 | -2.584 | -0.754 |
| 04 | -2.311 | -2.961 | -2.394 | 1.324 |
| 05 | -2.584 | -3.325 | -2.311 | 1.332 |
| 06 | -1.067 | -1.64 | -1.067 | 1.137 |
| 07 | 1.338 | -2.694 | -2.394 | -3.573 |
| 08 | -1.77 | -0.313 | -1.818 | 1.077 |
| 09 | -0.38 | -1.975 | 0.621 | 0.275 |
| 10 | -0.181 | -1.489 | 0.939 | -0.958 |
| 11 | -1.163 | 0.803 | -0.439 | -0.21 |
| 12 | -0.25 | 0.5 | -0.721 | 0.083 |