HXD11_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

HOXD11
(GeneCards)

Model

HXD11_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

HT-SELEX

Model release

HOCOMOCOv10

Model length

11

Quality

D

Motif rank

0

Consensus

dhTTTATKdnn

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

124

TF family

HOX-related factors {3.1.1}

TF subfamily

HOX9-13 {3.1.1.8}

HGNC

EntrezGene

GeneID:3237
(SSTAR profile)

UniProt ID

UniProt AC

P31277
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.925039999999999
0.0005	6.477065
0.0001	7.41967

GTEx tissue expression atlas

HOXD11 expression

ReMap ChIP-seq dataset list

HOXD11 datasets

Motifs in JASPAR

MA0908.1 (HOXD11; Homo sapiens)

PCM

	A	C	G	T
01	40.75	16.75	23.75	42.75
02	32.5	14.5	12.5	64.5
03	4.0	3.0	13.0	104.0
04	0.0	2.0	12.0	110.0
05	30.0	0.0	0.0	94.0
06	103.0	0.0	18.0	3.0
07	1.0	35.0	0.0	88.0
08	3.25	3.25	58.25	59.25
09	56.5	12.5	34.5	20.5
10	29.75	45.75	20.75	27.75
11	32.25	28.25	21.25	42.25

PWM

	A	C	G	T
01	0.264	-0.584	-0.255	0.311
02	0.046	-0.718	-0.854	0.713
03	-1.822	-2.036	-0.819	1.184
04	-3.286	-2.307	-0.892	1.239
05	-0.032	-3.286	-3.286	1.084
06	1.174	-3.286	-0.517	-2.036
07	-2.681	0.117	-3.286	1.019
08	-1.978	-1.978	0.613	0.63
09	0.583	-0.854	0.103	-0.395
10	-0.04	0.377	-0.383	-0.106
11	0.038	-0.089	-0.361	0.3