We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXD12
(GeneCards)
ModelHXD12_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusnnKTTTAnbdn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words8291
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5135
EntrezGeneGeneID:3238
(SSTAR profile)
UniProt IDHXD12_HUMAN
UniProt ACP35452
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.193670000000001
0.0005 6.625185
0.0001 7.331185
GTEx tissue expression atlas HOXD12 expression
ReMap ChIP-seq dataset list HOXD12 datasets
Motifs in JASPAR
PCM
ACGT
012370.351151.8221542.921657.387
022364.211908.7751575.2981874.196
031174.568318.9471182.0514046.913
04125.2566.382697.6345833.214
050.00.0299.3846423.095
060.00.63272.8276449.022
076722.480.00.00.0
081618.3171795.294890.7082418.16
09953.2691074.6962228.0892466.425
102731.014910.0281878.7061202.732
111313.2222324.3141649.1371435.807
PWM
ACGT
010.343-0.377-0.085-0.014
020.341-0.614-0.0650.109
03-0.358-1.656-0.3510.878
04-2.58-3.2-0.8771.243
05-6.638-6.638-1.7191.34
06-6.638-6.387-1.8111.344
071.385-6.638-6.638-6.638
08-0.0380.066-0.6340.363
09-0.566-0.4460.2820.383
100.485-0.6120.111-0.334
11-0.2460.324-0.019-0.157