Model info
| Transcription factor | HOXD13 (GeneCards) | ||||||||
| Model | HXD13_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WTTAYKRKRGM | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 13 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| HGNC | HGNC:5136 | ||||||||
| EntrezGene | GeneID:3239 (SSTAR profile) | ||||||||
| UniProt ID | HXD13_HUMAN | ||||||||
| UniProt AC | P35453 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HOXD13 expression | ||||||||
| ReMap ChIP-seq dataset list | HOXD13 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.657 | 1.526 | 1.526 | 7.291 |
| 02 | 0.0 | 0.0 | 1.017 | 11.983 |
| 03 | 1.017 | 0.0 | 2.261 | 9.722 |
| 04 | 10.202 | 0.254 | 0.254 | 2.289 |
| 05 | 0.933 | 2.967 | 0.254 | 8.846 |
| 06 | 1.272 | 0.254 | 2.967 | 8.507 |
| 07 | 8.393 | 1.272 | 2.402 | 0.933 |
| 08 | 0.254 | 0.933 | 8.28 | 3.533 |
| 09 | 5.765 | 0.0 | 6.217 | 1.017 |
| 10 | 0.0 | 0.0 | 11.304 | 1.696 |
| 11 | 8.648 | 2.204 | 0.509 | 1.639 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.165 | -0.585 | -0.585 | 0.712 |
| 02 | -1.803 | -1.803 | -0.853 | 1.177 |
| 03 | -0.853 | -1.803 | -0.293 | 0.98 |
| 04 | 1.025 | -1.469 | -1.469 | -0.284 |
| 05 | -0.905 | -0.075 | -1.469 | 0.891 |
| 06 | -0.71 | -1.469 | -0.075 | 0.855 |
| 07 | 0.842 | -0.71 | -0.246 | -0.905 |
| 08 | -1.469 | -0.905 | 0.83 | 0.07 |
| 09 | 0.499 | -1.803 | 0.567 | -0.853 |
| 10 | -1.803 | -1.803 | 1.122 | -0.51 |
| 11 | 0.87 | -0.313 | -1.219 | -0.534 |