We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXD13
(GeneCards)
ModelHXD13_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length11
Quality
D
Motif rank
0
ConsensusWTTAYKRKRGM
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words13
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5136
EntrezGeneGeneID:3239
(SSTAR profile)
UniProt IDHXD13_HUMAN
UniProt ACP35453
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.468895
0.0005 6.036715
0.0001 7.195065
GTEx tissue expression atlas HOXD13 expression
ReMap ChIP-seq dataset list HOXD13 datasets
Motifs in JASPAR
PCM
ACGT
012.6571.5261.5267.291
020.00.01.01711.983
031.0170.02.2619.722
0410.2020.2540.2542.289
050.9332.9670.2548.846
061.2720.2542.9678.507
078.3931.2722.4020.933
080.2540.9338.283.533
095.7650.06.2171.017
100.00.011.3041.696
118.6482.2040.5091.639
PWM
ACGT
01-0.165-0.585-0.5850.712
02-1.803-1.803-0.8531.177
03-0.853-1.803-0.2930.98
041.025-1.469-1.469-0.284
05-0.905-0.075-1.4690.891
06-0.71-1.469-0.0750.855
070.842-0.71-0.246-0.905
08-1.469-0.9050.830.07
090.499-1.8030.567-0.853
10-1.803-1.8031.122-0.51
110.87-0.313-1.219-0.534