HXD13_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

HOXD13
(GeneCards)

Model

HXD13_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

11

Quality

D

Motif rank

0

Consensus

WTTAYKRKRGM

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

13

TF family

HOX-related factors {3.1.1}

TF subfamily

HOX9-13 {3.1.1.8}

HGNC

EntrezGene

GeneID:3239
(SSTAR profile)

UniProt ID

UniProt AC

P35453
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.468895
0.0005	6.036715
0.0001	7.195065

GTEx tissue expression atlas

HOXD13 expression

ReMap ChIP-seq dataset list

HOXD13 datasets

Motifs in JASPAR

MA0909.1 (HOXD13; Homo sapiens)

PCM

	A	C	G	T
01	2.657	1.526	1.526	7.291
02	0.0	0.0	1.017	11.983
03	1.017	0.0	2.261	9.722
04	10.202	0.254	0.254	2.289
05	0.933	2.967	0.254	8.846
06	1.272	0.254	2.967	8.507
07	8.393	1.272	2.402	0.933
08	0.254	0.933	8.28	3.533
09	5.765	0.0	6.217	1.017
10	0.0	0.0	11.304	1.696
11	8.648	2.204	0.509	1.639

PWM

	A	C	G	T
01	-0.165	-0.585	-0.585	0.712
02	-1.803	-1.803	-0.853	1.177
03	-0.853	-1.803	-0.293	0.98
04	1.025	-1.469	-1.469	-0.284
05	-0.905	-0.075	-1.469	0.891
06	-0.71	-1.469	-0.075	0.855
07	0.842	-0.71	-0.246	-0.905
08	-1.469	-0.905	0.83	0.07
09	0.499	-1.803	0.567	-0.853
10	-1.803	-1.803	1.122	-0.51
11	0.87	-0.313	-1.219	-0.534