We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXD3
(GeneCards)
ModelHXD3_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusnRbTAATTRbd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words601
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX3 {3.1.1.3}
HGNCHGNC:5137
EntrezGeneGeneID:3232
(SSTAR profile)
UniProt IDHXD3_HUMAN
UniProt ACP31249
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.533715000000001
0.0005 6.3199950000000005
0.0001 7.702660000000001
GTEx tissue expression atlas HOXD3 expression
ReMap ChIP-seq dataset list HOXD3 datasets
Motifs in JASPAR
PCM
ACGT
01123.75147.75188.75136.75
02146.540.5343.566.5
0329.75126.75168.75271.75
040.750.753.75591.75
05548.00.049.00.0
06542.00.055.00.0
070.00.062.0535.0
085.05.0119.0468.0
09431.012.0135.019.0
10100.5107.5274.5114.5
1199.2592.25258.25147.25
PWM
ACGT
01-0.185-0.010.233-0.087
02-0.018-1.2760.828-0.795
03-1.571-0.1620.1220.594
04-4.163-4.163-3.341.37
051.293-4.548-1.092-4.548
061.282-4.548-0.98-4.548
07-4.548-4.548-0.8641.269
08-3.13-3.13-0.2241.136
091.054-2.406-0.099-1.991
10-0.39-0.3240.604-0.262
11-0.403-0.4750.544-0.013