Model info
| Transcription factor | HOXD3 (GeneCards) | ||||||||
| Model | HXD3_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nRbTAATTRbd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 601 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX3 {3.1.1.3} | ||||||||
| HGNC | HGNC:5137 | ||||||||
| EntrezGene | GeneID:3232 (SSTAR profile) | ||||||||
| UniProt ID | HXD3_HUMAN | ||||||||
| UniProt AC | P31249 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HOXD3 expression | ||||||||
| ReMap ChIP-seq dataset list | HOXD3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 123.75 | 147.75 | 188.75 | 136.75 |
| 02 | 146.5 | 40.5 | 343.5 | 66.5 |
| 03 | 29.75 | 126.75 | 168.75 | 271.75 |
| 04 | 0.75 | 0.75 | 3.75 | 591.75 |
| 05 | 548.0 | 0.0 | 49.0 | 0.0 |
| 06 | 542.0 | 0.0 | 55.0 | 0.0 |
| 07 | 0.0 | 0.0 | 62.0 | 535.0 |
| 08 | 5.0 | 5.0 | 119.0 | 468.0 |
| 09 | 431.0 | 12.0 | 135.0 | 19.0 |
| 10 | 100.5 | 107.5 | 274.5 | 114.5 |
| 11 | 99.25 | 92.25 | 258.25 | 147.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.185 | -0.01 | 0.233 | -0.087 |
| 02 | -0.018 | -1.276 | 0.828 | -0.795 |
| 03 | -1.571 | -0.162 | 0.122 | 0.594 |
| 04 | -4.163 | -4.163 | -3.34 | 1.37 |
| 05 | 1.293 | -4.548 | -1.092 | -4.548 |
| 06 | 1.282 | -4.548 | -0.98 | -4.548 |
| 07 | -4.548 | -4.548 | -0.864 | 1.269 |
| 08 | -3.13 | -3.13 | -0.224 | 1.136 |
| 09 | 1.054 | -2.406 | -0.099 | -1.991 |
| 10 | -0.39 | -0.324 | 0.604 | -0.262 |
| 11 | -0.403 | -0.475 | 0.544 | -0.013 |