Model info
| Transcription factor | Hoxd4 | ||||||||
| Model | HXD4_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 8 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | KTAATTnW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 8 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX4 {3.1.1.4} | ||||||||
| MGI | MGI:96208 | ||||||||
| EntrezGene | GeneID:15436 (SSTAR profile) | ||||||||
| UniProt ID | HXD4_MOUSE | ||||||||
| UniProt AC | P10628 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxd4 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.247 | 0.247 | 2.219 | 5.288 |
| 02 | 0.0 | 0.0 | 0.0 | 8.0 |
| 03 | 6.027 | 0.986 | 0.986 | 0.0 |
| 04 | 7.014 | 0.0 | 0.986 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 8.0 |
| 06 | 0.0 | 0.0 | 0.0 | 8.0 |
| 07 | 0.986 | 0.986 | 4.055 | 1.973 |
| 08 | 3.315 | 0.247 | 1.233 | 3.205 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.19 | -1.19 | 0.083 | 0.835 |
| 02 | -1.578 | -1.578 | -1.578 | 1.218 |
| 03 | 0.955 | -0.515 | -0.515 | -1.578 |
| 04 | 1.095 | -1.578 | -0.515 | -1.578 |
| 05 | -1.578 | -1.578 | -1.578 | 1.218 |
| 06 | -1.578 | -1.578 | -1.578 | 1.218 |
| 07 | -0.515 | -0.515 | 0.596 | -0.011 |
| 08 | 0.42 | -1.19 | -0.363 | 0.391 |