We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHOXD8
(GeneCards)
ModelHXD8_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensushhWTWTRCvnn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words278
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX8 {3.1.1.7}
HGNCHGNC:5139
EntrezGeneGeneID:3234
(SSTAR profile)
UniProt IDHXD8_HUMAN
UniProt ACP13378
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.901059999999999
0.0005 6.51161
0.0001 7.595505000000001
GTEx tissue expression atlas HOXD8 expression
ReMap ChIP-seq dataset list HOXD8 datasets
Motifs in JASPAR
PCM
ACGT
0182.043.028.0125.0
02154.554.521.547.5
03202.08.07.061.0
040.755.756.75264.75
0595.00.06.0177.0
0686.01.00.0191.0
0735.03.0213.027.0
083.25268.253.253.25
09123.2553.2551.2550.25
1054.060.053.0111.0
1195.556.554.571.5
PWM
ACGT
010.162-0.468-0.880.578
020.788-0.238-1.13-0.371
031.054-2.02-2.132-0.128
04-3.493-2.293-2.1631.323
050.307-3.92-2.2590.923
060.209-3.383-3.920.998
07-0.667-2.7781.107-0.915
08-2.7231.336-2.723-2.723
090.564-0.26-0.298-0.317
10-0.247-0.144-0.2650.461
110.312-0.203-0.2380.028