Transcription factor | HOXD8 (GeneCards) | ||||||||
Model | HXD8_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | HT-SELEX | ||||||||
Model release | HOCOMOCOv10 | ||||||||
Model length | 11 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | hhWTWTRCvnn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 278 | ||||||||
TF family | HOX-related factors {3.1.1} | ||||||||
TF subfamily | HOX8 {3.1.1.7} | ||||||||
HGNC | HGNC:5139 | ||||||||
EntrezGene | GeneID:3234 (SSTAR profile) | ||||||||
UniProt ID | HXD8_HUMAN | ||||||||
UniProt AC | P13378 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | HOXD8 expression | ||||||||
ReMap ChIP-seq dataset list | HOXD8 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 82.0 | 43.0 | 28.0 | 125.0 |
02 | 154.5 | 54.5 | 21.5 | 47.5 |
03 | 202.0 | 8.0 | 7.0 | 61.0 |
04 | 0.75 | 5.75 | 6.75 | 264.75 |
05 | 95.0 | 0.0 | 6.0 | 177.0 |
06 | 86.0 | 1.0 | 0.0 | 191.0 |
07 | 35.0 | 3.0 | 213.0 | 27.0 |
08 | 3.25 | 268.25 | 3.25 | 3.25 |
09 | 123.25 | 53.25 | 51.25 | 50.25 |
10 | 54.0 | 60.0 | 53.0 | 111.0 |
11 | 95.5 | 56.5 | 54.5 | 71.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.162 | -0.468 | -0.88 | 0.578 |
02 | 0.788 | -0.238 | -1.13 | -0.371 |
03 | 1.054 | -2.02 | -2.132 | -0.128 |
04 | -3.493 | -2.293 | -2.163 | 1.323 |
05 | 0.307 | -3.92 | -2.259 | 0.923 |
06 | 0.209 | -3.383 | -3.92 | 0.998 |
07 | -0.667 | -2.778 | 1.107 | -0.915 |
08 | -2.723 | 1.336 | -2.723 | -2.723 |
09 | 0.564 | -0.26 | -0.298 | -0.317 |
10 | -0.247 | -0.144 | -0.265 | 0.461 |
11 | 0.312 | -0.203 | -0.238 | 0.028 |