We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorHoxd9
ModelHXD9_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
0
ConsensusAnWTTnATnn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words6
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
MGIMGI:96210
EntrezGeneGeneID:15438
(SSTAR profile)
UniProt IDHXD9_MOUSE
UniProt ACP28357
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4623349999999995
0.0005 6.0952
0.0001 7.4754249999999995
GTEx tissue expression atlas Hoxd9 expression
Motifs in JASPAR
PCM
ACGT
015.250.250.250.25
023.00.03.00.0
032.01.00.03.0
041.00.00.05.0
050.00.00.06.0
062.01.01.02.0
076.00.00.00.0
080.00.00.06.0
090.00.03.03.0
102.250.252.251.25
PWM
ACGT
011.073-1.026-1.026-1.026
020.571-1.470.571-1.47
030.228-0.297-1.470.571
04-0.297-1.47-1.471.028
05-1.47-1.47-1.471.197
060.228-0.297-0.2970.228
071.197-1.47-1.47-1.47
08-1.47-1.47-1.471.197
09-1.47-1.470.5710.571
100.326-1.0260.326-0.137