Model info
| Transcription factor | Hoxd9 | ||||||||
| Model | HXD9_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | AnWTTnATnn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 6 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| MGI | MGI:96210 | ||||||||
| EntrezGene | GeneID:15438 (SSTAR profile) | ||||||||
| UniProt ID | HXD9_MOUSE | ||||||||
| UniProt AC | P28357 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxd9 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5.25 | 0.25 | 0.25 | 0.25 |
| 02 | 3.0 | 0.0 | 3.0 | 0.0 |
| 03 | 2.0 | 1.0 | 0.0 | 3.0 |
| 04 | 1.0 | 0.0 | 0.0 | 5.0 |
| 05 | 0.0 | 0.0 | 0.0 | 6.0 |
| 06 | 2.0 | 1.0 | 1.0 | 2.0 |
| 07 | 6.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 6.0 |
| 09 | 0.0 | 0.0 | 3.0 | 3.0 |
| 10 | 2.25 | 0.25 | 2.25 | 1.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.073 | -1.026 | -1.026 | -1.026 |
| 02 | 0.571 | -1.47 | 0.571 | -1.47 |
| 03 | 0.228 | -0.297 | -1.47 | 0.571 |
| 04 | -0.297 | -1.47 | -1.47 | 1.028 |
| 05 | -1.47 | -1.47 | -1.47 | 1.197 |
| 06 | 0.228 | -0.297 | -0.297 | 0.228 |
| 07 | 1.197 | -1.47 | -1.47 | -1.47 |
| 08 | -1.47 | -1.47 | -1.47 | 1.197 |
| 09 | -1.47 | -1.47 | 0.571 | 0.571 |
| 10 | 0.326 | -1.026 | 0.326 | -0.137 |