We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorIRF1
(GeneCards)
ModelIRF1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length23
Quality
A
Motif rank
0
ConsensusnnRAAnhGAAASYGAAAShvdvn
Best auROC (human)0.997
Best auROC (mouse)0.998
Peak sets in benchmark (human)23
Peak sets in benchmark (mouse)18
Aligned words453
TF familyInterferon-regulatory factors {3.5.3}
TF subfamilyIRF-1 {3.5.3.0.1}
HGNCHGNC:6116
EntrezGeneGeneID:3659
(SSTAR profile)
UniProt IDIRF1_HUMAN
UniProt ACP10914
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.94296
0.0005 6.896260000000001
0.0001 13.245610000000001
GTEx tissue expression atlas IRF1 expression
ReMap ChIP-seq dataset list IRF1 datasets
Motifs in JASPAR
MA0050.1 (IRF1; Homo sapiens)
MA0050.2 (IRF1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0139.013.083.06.051.08.08.08.019.09.043.011.040.07.033.012.0
0284.011.048.06.029.02.01.05.0107.05.052.03.018.01.012.06.0
03210.05.09.014.08.06.02.03.0102.00.04.07.016.02.01.01.0
04298.09.017.012.011.01.00.01.016.00.00.00.014.01.02.08.0
05122.092.085.040.06.03.00.02.05.07.03.04.06.05.03.07.0
0626.033.020.060.026.043.02.036.030.013.09.039.022.05.016.010.0
074.00.0100.00.058.00.035.01.011.00.036.00.08.00.0137.00.0
0881.00.00.00.00.00.00.00.0307.00.01.00.01.00.00.00.0
09387.00.00.02.00.00.00.00.01.00.00.00.00.00.00.00.0
10388.00.00.00.00.00.00.00.00.00.00.00.02.00.00.00.0
1122.0203.0159.06.00.00.00.00.00.00.00.00.00.00.00.00.0
121.03.00.018.038.051.02.0112.023.019.05.0112.01.01.00.04.0
133.00.060.00.047.01.026.00.01.00.06.00.015.00.0231.00.0
1462.00.04.00.01.00.00.00.0313.00.08.02.00.00.00.00.0
15374.00.00.02.00.00.00.00.012.00.00.00.02.00.00.00.0
16378.01.09.00.00.00.00.00.00.00.00.00.01.00.01.00.0
1718.0157.0189.015.00.01.00.00.00.04.05.01.00.00.00.00.0
181.05.01.011.016.074.05.067.033.042.025.094.04.07.04.01.0
1924.06.024.00.088.010.014.016.016.04.013.02.055.024.074.020.0
20107.017.036.023.022.06.07.09.056.015.036.018.015.07.03.013.0
21107.030.053.010.019.011.03.012.025.013.020.024.019.012.026.06.0
2279.042.032.017.017.019.09.021.031.031.023.017.015.010.010.017.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.464-0.6161.215-1.3570.73-1.084-1.084-1.084-0.245-0.9710.561-0.7780.489-1.2110.299-0.693
021.227-0.7780.67-1.3570.171-2.345-2.892-1.5271.468-1.5270.75-1.993-0.298-2.892-0.693-1.357
032.14-1.527-0.971-0.543-1.084-1.357-2.345-1.9931.42-4.195-1.733-1.211-0.413-2.345-2.892-2.892
042.49-0.971-0.354-0.693-0.778-2.892-4.195-2.892-0.413-4.195-4.195-4.195-0.543-2.892-2.345-1.084
051.5981.3171.2380.489-1.357-1.993-4.195-2.345-1.527-1.211-1.993-1.733-1.357-1.527-1.993-1.211
060.0640.299-0.1950.8920.0640.561-2.3450.3850.205-0.616-0.9710.464-0.101-1.527-0.413-0.87
07-1.733-4.1951.4-4.1950.858-4.1950.357-2.892-0.778-4.1950.385-4.195-1.084-4.1951.714-4.195
081.19-4.195-4.195-4.195-4.195-4.195-4.195-4.1952.519-4.195-2.892-4.195-2.892-4.195-4.195-4.195
092.751-4.195-4.195-2.345-4.195-4.195-4.195-4.195-2.892-4.195-4.195-4.195-4.195-4.195-4.195-4.195
102.753-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-2.345-4.195-4.195-4.195
11-0.1012.1061.863-1.357-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195
12-2.892-1.993-4.195-0.2980.4390.73-2.3451.513-0.057-0.245-1.5271.513-2.892-2.892-4.195-1.733
13-1.993-4.1950.892-4.1950.649-2.8920.064-4.195-2.892-4.195-1.357-4.195-0.476-4.1952.235-4.195
140.924-4.195-1.733-4.195-2.892-4.195-4.195-4.1952.539-4.195-1.084-2.345-4.195-4.195-4.195-4.195
152.717-4.195-4.195-2.345-4.195-4.195-4.195-4.195-0.693-4.195-4.195-4.195-2.345-4.195-4.195-4.195
162.727-2.892-0.971-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-2.892-4.195-2.892-4.195
17-0.2981.852.035-0.476-4.195-2.892-4.195-4.195-4.195-1.733-1.527-2.892-4.195-4.195-4.195-4.195
18-2.892-1.527-2.892-0.778-0.4131.1-1.5271.0020.2990.5380.0251.339-1.733-1.211-1.733-2.892
19-0.015-1.357-0.015-4.1951.273-0.87-0.543-0.413-0.413-1.733-0.616-2.3450.805-0.0151.1-0.195
201.468-0.3540.385-0.057-0.101-1.357-1.211-0.9710.823-0.4760.385-0.298-0.476-1.211-1.993-0.616
211.4680.2050.769-0.87-0.245-0.778-1.993-0.6930.025-0.616-0.195-0.015-0.245-0.6930.064-1.357
221.1650.5380.269-0.354-0.354-0.245-0.971-0.1470.2370.237-0.057-0.354-0.476-0.87-0.87-0.354