Model info
| Transcription factor | IRF1 (GeneCards) | ||||||||
| Model | IRF1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRRWndGAAASWGAAAShvv | ||||||||
| Best auROC (human) | 0.997 | ||||||||
| Best auROC (mouse) | 0.998 | ||||||||
| Peak sets in benchmark (human) | 23 | ||||||||
| Peak sets in benchmark (mouse) | 18 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | Interferon-regulatory factors {3.5.3} | ||||||||
| TF subfamily | IRF-1 {3.5.3.0.1} | ||||||||
| HGNC | HGNC:6116 | ||||||||
| EntrezGene | GeneID:3659 (SSTAR profile) | ||||||||
| UniProt ID | IRF1_HUMAN | ||||||||
| UniProt AC | P10914 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | IRF1 expression | ||||||||
| ReMap ChIP-seq dataset list | IRF1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 169.0 | 88.0 | 178.0 | 64.0 |
| 02 | 302.0 | 49.0 | 96.0 | 52.0 |
| 03 | 328.0 | 48.0 | 64.0 | 59.0 |
| 04 | 367.0 | 37.0 | 39.0 | 56.0 |
| 05 | 155.0 | 114.0 | 133.0 | 97.0 |
| 06 | 149.0 | 69.0 | 76.0 | 205.0 |
| 07 | 83.0 | 4.0 | 410.0 | 2.0 |
| 08 | 466.0 | 5.0 | 23.0 | 5.0 |
| 09 | 493.0 | 1.0 | 0.0 | 5.0 |
| 10 | 491.0 | 1.0 | 3.0 | 4.0 |
| 11 | 68.0 | 182.0 | 234.0 | 15.0 |
| 12 | 100.0 | 50.0 | 11.0 | 338.0 |
| 13 | 53.0 | 2.0 | 443.0 | 1.0 |
| 14 | 468.0 | 8.0 | 21.0 | 2.0 |
| 15 | 480.0 | 0.0 | 14.0 | 5.0 |
| 16 | 492.0 | 2.0 | 2.0 | 3.0 |
| 17 | 22.0 | 180.0 | 273.0 | 24.0 |
| 18 | 98.0 | 121.0 | 38.0 | 242.0 |
| 19 | 234.0 | 62.0 | 154.0 | 49.0 |
| 20 | 218.0 | 80.0 | 134.0 | 67.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.3 | -0.344 | 0.352 | -0.656 |
| 02 | 0.877 | -0.916 | -0.258 | -0.858 |
| 03 | 0.959 | -0.936 | -0.656 | -0.735 |
| 04 | 1.071 | -1.187 | -1.136 | -0.786 |
| 05 | 0.215 | -0.089 | 0.063 | -0.248 |
| 06 | 0.176 | -0.582 | -0.488 | 0.492 |
| 07 | -0.401 | -3.124 | 1.181 | -3.571 |
| 08 | 1.309 | -2.959 | -1.638 | -2.959 |
| 09 | 1.365 | -3.901 | -4.398 | -2.959 |
| 10 | 1.361 | -3.901 | -3.323 | -3.124 |
| 11 | -0.597 | 0.374 | 0.623 | -2.032 |
| 12 | -0.218 | -0.896 | -2.309 | 0.989 |
| 13 | -0.84 | -3.571 | 1.258 | -3.901 |
| 14 | 1.313 | -2.582 | -1.723 | -3.571 |
| 15 | 1.338 | -4.398 | -2.094 | -2.959 |
| 16 | 1.363 | -3.571 | -3.571 | -3.323 |
| 17 | -1.679 | 0.363 | 0.776 | -1.598 |
| 18 | -0.238 | -0.03 | -1.161 | 0.657 |
| 19 | 0.623 | -0.687 | 0.208 | -0.916 |
| 20 | 0.553 | -0.437 | 0.071 | -0.611 |