Model info
| Transcription factor | Irf1 | ||||||||
| Model | IRF1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRMWnhGAAASYGAAASYvd | ||||||||
| Best auROC (human) | 0.997 | ||||||||
| Best auROC (mouse) | 0.999 | ||||||||
| Peak sets in benchmark (human) | 23 | ||||||||
| Peak sets in benchmark (mouse) | 18 | ||||||||
| Aligned words | 504 | ||||||||
| TF family | Interferon-regulatory factors {3.5.3} | ||||||||
| TF subfamily | IRF-1 {3.5.3.0.1} | ||||||||
| MGI | MGI:96590 | ||||||||
| EntrezGene | GeneID:16362 (SSTAR profile) | ||||||||
| UniProt ID | IRF1_MOUSE | ||||||||
| UniProt AC | P15314 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Irf1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 154.0 | 74.0 | 210.0 | 62.0 |
| 02 | 273.0 | 36.0 | 149.0 | 42.0 |
| 03 | 344.0 | 59.0 | 50.0 | 47.0 |
| 04 | 359.0 | 42.0 | 46.0 | 53.0 |
| 05 | 129.0 | 117.0 | 154.0 | 100.0 |
| 06 | 127.0 | 93.0 | 72.0 | 208.0 |
| 07 | 71.0 | 2.0 | 425.0 | 2.0 |
| 08 | 475.0 | 3.0 | 22.0 | 0.0 |
| 09 | 494.0 | 1.0 | 1.0 | 4.0 |
| 10 | 499.0 | 0.0 | 0.0 | 1.0 |
| 11 | 60.0 | 190.0 | 242.0 | 8.0 |
| 12 | 53.0 | 98.0 | 2.0 | 347.0 |
| 13 | 38.0 | 2.0 | 458.0 | 2.0 |
| 14 | 468.0 | 5.0 | 25.0 | 2.0 |
| 15 | 496.0 | 0.0 | 3.0 | 1.0 |
| 16 | 488.0 | 1.0 | 5.0 | 6.0 |
| 17 | 23.0 | 208.0 | 257.0 | 12.0 |
| 18 | 59.0 | 142.0 | 24.0 | 275.0 |
| 19 | 212.0 | 66.0 | 162.0 | 60.0 |
| 20 | 232.0 | 69.0 | 127.0 | 72.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.206 | -0.516 | 0.514 | -0.689 |
| 02 | 0.774 | -1.215 | 0.174 | -1.067 |
| 03 | 1.004 | -0.737 | -0.898 | -0.958 |
| 04 | 1.047 | -1.067 | -0.979 | -0.841 |
| 05 | 0.031 | -0.065 | 0.206 | -0.22 |
| 06 | 0.016 | -0.291 | -0.543 | 0.504 |
| 07 | -0.556 | -3.573 | 1.215 | -3.573 |
| 08 | 1.326 | -3.325 | -1.681 | -4.4 |
| 09 | 1.365 | -3.903 | -3.903 | -3.126 |
| 10 | 1.375 | -4.4 | -4.4 | -3.903 |
| 11 | -0.721 | 0.415 | 0.655 | -2.584 |
| 12 | -0.841 | -0.24 | -3.573 | 1.013 |
| 13 | -1.163 | -3.573 | 1.29 | -3.573 |
| 14 | 1.311 | -2.961 | -1.561 | -3.573 |
| 15 | 1.369 | -4.4 | -3.325 | -3.903 |
| 16 | 1.353 | -3.903 | -2.961 | -2.819 |
| 17 | -1.64 | 0.504 | 0.714 | -2.234 |
| 18 | -0.737 | 0.126 | -1.6 | 0.782 |
| 19 | 0.523 | -0.628 | 0.256 | -0.721 |
| 20 | 0.613 | -0.584 | 0.016 | -0.543 |