We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorIRF2
(GeneCards)
ModelIRF2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length21
Quality
A
Motif rank
0
ConsensusndRRvnRAAASYGAAASYvvn
Best auROC (human)0.988
Best auROC (mouse)
Peak sets in benchmark (human)8
Peak sets in benchmark (mouse)
Aligned words513
TF familyInterferon-regulatory factors {3.5.3}
TF subfamilyIRF-2 {3.5.3.0.2}
HGNCHGNC:6117
EntrezGeneGeneID:3660
(SSTAR profile)
UniProt IDIRF2_HUMAN
UniProt ACP14316
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.48701
0.0005 9.06591
0.0001 14.50186
GTEx tissue expression atlas IRF2 expression
ReMap ChIP-seq dataset list IRF2 datasets
Motifs in JASPAR
MA0051.1 (IRF2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0182.010.044.016.059.020.014.015.098.012.032.08.037.04.037.012.0
02217.09.040.010.015.08.011.012.077.014.022.014.018.06.021.06.0
03279.010.023.015.014.015.02.06.059.012.013.010.017.07.07.011.0
04119.080.0147.023.012.011.07.014.011.012.018.04.012.08.015.07.0
0526.038.023.067.040.024.07.040.046.045.029.067.015.013.013.07.0
067.013.0105.02.044.05.069.02.012.06.049.05.014.01.0165.01.0
0766.01.010.00.023.00.02.00.0363.00.023.02.06.00.04.00.0
08454.02.01.01.01.00.00.00.037.00.02.00.02.00.00.00.0
09492.00.01.01.00.00.01.01.02.00.01.00.01.00.00.00.0
1048.0137.0291.019.00.00.00.00.02.00.01.00.00.02.00.00.0
114.025.00.021.015.057.01.066.024.061.06.0201.01.04.010.04.0
127.00.037.00.027.02.0117.01.01.00.016.00.013.00.0278.01.0
1345.00.03.00.02.00.00.00.0422.00.024.02.00.00.00.02.0
14451.03.015.00.00.00.00.00.026.01.00.00.00.02.02.00.0
15468.01.05.03.04.02.00.00.011.00.05.01.00.00.00.00.0
1616.0176.0282.09.00.03.00.00.00.03.07.00.01.01.02.00.0
172.09.00.06.020.067.04.092.026.059.031.0175.01.03.00.05.0
1816.011.019.03.061.016.036.025.022.05.08.00.095.035.0121.027.0
1996.018.066.014.036.016.08.07.057.037.071.019.016.016.018.05.0
2078.038.056.033.025.024.014.024.037.052.039.035.011.010.017.07.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.957-1.1140.339-0.6580.63-0.439-0.788-0.7211.135-0.9380.023-1.3280.167-1.9750.167-0.938
021.927-1.2150.244-1.114-0.721-1.328-1.022-0.9380.894-0.788-0.346-0.788-0.543-1.6-0.392-1.6
032.178-1.114-0.302-0.721-0.788-0.721-2.584-1.60.63-0.938-0.86-1.114-0.599-1.454-1.454-1.022
041.3280.9321.539-0.302-0.938-1.022-1.454-0.788-1.022-0.938-0.543-1.975-0.938-1.328-0.721-1.454
05-0.1810.193-0.3020.7560.244-0.26-1.4540.2440.3830.361-0.0740.756-0.721-0.86-0.86-1.454
06-1.454-0.861.203-2.5840.339-1.770.785-2.584-0.938-1.60.445-1.77-0.788-3.1261.654-3.126
070.741-3.126-1.114-4.4-0.302-4.4-2.584-4.42.441-4.4-0.302-2.584-1.6-4.4-1.975-4.4
082.665-2.584-3.126-3.126-3.126-4.4-4.4-4.40.167-4.4-2.584-4.4-2.584-4.4-4.4-4.4
092.745-4.4-3.126-3.126-4.4-4.4-3.126-3.126-2.584-4.4-3.126-4.4-3.126-4.4-4.4-4.4
100.4251.4682.22-0.49-4.4-4.4-4.4-4.4-2.584-4.4-3.126-4.4-4.4-2.584-4.4-4.4
11-1.975-0.22-4.4-0.392-0.7210.595-3.1260.741-0.260.663-1.61.851-3.126-1.975-1.114-1.975
12-1.454-4.40.167-4.4-0.144-2.5841.311-3.126-3.126-4.4-0.658-4.4-0.86-4.42.175-3.126
130.361-4.4-2.234-4.4-2.584-4.4-4.4-4.42.592-4.4-0.26-2.584-4.4-4.4-4.4-2.584
142.658-2.234-0.721-4.4-4.4-4.4-4.4-4.4-0.181-3.126-4.4-4.4-4.4-2.584-2.584-4.4
152.695-3.126-1.77-2.234-1.975-2.584-4.4-4.4-1.022-4.4-1.77-3.126-4.4-4.4-4.4-4.4
16-0.6581.7182.189-1.215-4.4-2.234-4.4-4.4-4.4-2.234-1.454-4.4-3.126-3.126-2.584-4.4
17-2.584-1.215-4.4-1.6-0.4390.756-1.9751.072-0.1810.63-0.0081.713-3.126-2.234-4.4-1.77
18-0.658-1.022-0.49-2.2340.663-0.6580.14-0.22-0.346-1.77-1.328-4.41.1040.1121.345-0.144
191.114-0.5430.741-0.7880.14-0.658-1.328-1.4540.5950.1670.814-0.49-0.658-0.658-0.543-1.77
200.9070.1930.5780.054-0.22-0.26-0.788-0.260.1670.5040.2190.112-1.022-1.114-0.599-1.454