Transcription factor | IRF2 (GeneCards) | ||||||||
Model | IRF2_HUMAN.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 20 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nRRWvhGAAASYGAAASYvv | ||||||||
Best auROC (human) | 0.994 | ||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | 8 | ||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 499 | ||||||||
TF family | Interferon-regulatory factors {3.5.3} | ||||||||
TF subfamily | IRF-2 {3.5.3.0.2} | ||||||||
HGNC | HGNC:6117 | ||||||||
EntrezGene | GeneID:3660 (SSTAR profile) | ||||||||
UniProt ID | IRF2_HUMAN | ||||||||
UniProt AC | P14316 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | IRF2 expression | ||||||||
ReMap ChIP-seq dataset list | IRF2 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 142.0 | 89.0 | 183.0 | 84.0 |
02 | 306.0 | 48.0 | 107.0 | 37.0 |
03 | 355.0 | 36.0 | 54.0 | 53.0 |
04 | 376.0 | 28.0 | 39.0 | 55.0 |
05 | 141.0 | 99.0 | 192.0 | 66.0 |
06 | 129.0 | 111.0 | 63.0 | 195.0 |
07 | 84.0 | 12.0 | 398.0 | 4.0 |
08 | 487.0 | 0.0 | 10.0 | 1.0 |
09 | 495.0 | 1.0 | 2.0 | 0.0 |
10 | 484.0 | 0.0 | 8.0 | 6.0 |
11 | 65.0 | 131.0 | 294.0 | 8.0 |
12 | 44.0 | 109.0 | 4.0 | 341.0 |
13 | 27.0 | 5.0 | 459.0 | 7.0 |
14 | 470.0 | 5.0 | 23.0 | 0.0 |
15 | 492.0 | 0.0 | 6.0 | 0.0 |
16 | 487.0 | 0.0 | 6.0 | 5.0 |
17 | 3.0 | 188.0 | 290.0 | 17.0 |
18 | 49.0 | 131.0 | 32.0 | 286.0 |
19 | 201.0 | 64.0 | 191.0 | 42.0 |
20 | 182.0 | 104.0 | 154.0 | 58.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.13 | -0.331 | 0.381 | -0.388 |
02 | 0.892 | -0.934 | -0.149 | -1.185 |
03 | 1.04 | -1.211 | -0.819 | -0.838 |
04 | 1.097 | -1.451 | -1.134 | -0.802 |
05 | 0.123 | -0.226 | 0.429 | -0.624 |
06 | 0.035 | -0.113 | -0.669 | 0.444 |
07 | -0.388 | -2.23 | 1.154 | -3.122 |
08 | 1.355 | -4.397 | -2.39 | -3.9 |
09 | 1.371 | -3.9 | -3.569 | -4.397 |
10 | 1.349 | -4.397 | -2.58 | -2.815 |
11 | -0.639 | 0.05 | 0.852 | -2.58 |
12 | -1.018 | -0.131 | -3.122 | 1.0 |
13 | -1.485 | -2.957 | 1.296 | -2.69 |
14 | 1.319 | -2.957 | -1.636 | -4.397 |
15 | 1.365 | -4.397 | -2.815 | -4.397 |
16 | 1.355 | -4.397 | -2.815 | -2.957 |
17 | -3.321 | 0.408 | 0.839 | -1.916 |
18 | -0.914 | 0.05 | -1.324 | 0.825 |
19 | 0.474 | -0.654 | 0.424 | -1.063 |
20 | 0.376 | -0.177 | 0.21 | -0.75 |