We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorIRF4
(GeneCards)
ModelIRF4_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusndddRvRGAASTGARWvhn
Best auROC (human)0.958
Best auROC (mouse)0.982
Peak sets in benchmark (human)19
Peak sets in benchmark (mouse)61
Aligned words502
TF familyInterferon-regulatory factors {3.5.3}
TF subfamilyIRF-4 (LSIRF, NF-EM5, MUM1, Pip) {3.5.3.0.4}
HGNCHGNC:6119
EntrezGeneGeneID:3662
(SSTAR profile)
UniProt IDIRF4_HUMAN
UniProt ACQ15306
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.442160000000001
0.0005 11.431460000000001
0.0001 15.659510000000001
GTEx tissue expression atlas IRF4 expression
ReMap ChIP-seq dataset list IRF4 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0184.013.039.030.064.017.08.019.081.09.026.032.016.06.022.034.0
02155.018.045.027.029.06.02.08.051.09.026.09.024.017.025.049.0
03134.015.055.055.029.03.03.015.045.08.023.022.020.05.022.046.0
0452.028.0134.014.016.03.08.04.024.05.068.06.013.014.0106.05.0
0538.09.056.02.032.07.03.08.0160.030.099.027.012.02.014.01.0
0623.02.0211.06.034.05.08.01.036.00.0132.04.011.08.018.01.0
0718.02.083.01.011.01.03.00.019.02.0346.02.00.00.012.00.0
0831.00.03.014.03.00.00.02.0430.03.06.05.03.00.00.00.0
09445.02.09.011.01.00.01.01.06.02.00.01.019.00.00.02.0
1063.0197.0198.013.00.00.04.00.01.03.06.00.00.04.011.00.0
112.07.08.047.016.012.05.0171.014.015.011.0179.01.01.01.010.0
121.00.030.02.08.00.025.02.03.01.018.03.012.00.0384.011.0
1317.01.04.02.01.00.00.00.0411.02.037.07.07.02.07.02.0
14274.031.0119.012.01.02.01.01.010.010.024.04.03.00.04.04.0
15260.013.06.09.026.06.01.010.0109.012.013.014.07.04.07.03.0
1642.0125.0209.026.017.07.05.06.08.012.05.02.08.011.012.05.0
1721.023.011.020.030.052.06.067.054.058.025.094.04.010.08.017.0
1836.012.051.010.061.029.019.034.018.09.05.018.041.047.070.040.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.981-0.860.219-0.040.711-0.599-1.328-0.490.945-1.215-0.1810.023-0.658-1.6-0.3460.083
021.592-0.5430.361-0.144-0.074-1.6-2.584-1.3280.485-1.215-0.181-1.215-0.26-0.599-0.220.445
031.446-0.7210.560.56-0.074-2.234-2.234-0.7210.361-1.328-0.302-0.346-0.439-1.77-0.3460.383
040.504-0.1081.446-0.788-0.658-2.234-1.328-1.975-0.26-1.770.771-1.6-0.86-0.7881.213-1.77
050.193-1.2150.578-2.5840.023-1.454-2.234-1.3281.623-0.041.145-0.144-0.938-2.584-0.788-3.126
06-0.302-2.5841.899-1.60.083-1.77-1.328-3.1260.14-4.41.431-1.975-1.022-1.328-0.543-3.126
07-0.543-2.5840.969-3.126-1.022-3.126-2.234-4.4-0.49-2.5842.393-2.584-4.4-4.4-0.938-4.4
08-0.008-4.4-2.234-0.788-2.234-4.4-4.4-2.5842.61-2.234-1.6-1.77-2.234-4.4-4.4-4.4
092.645-2.584-1.215-1.022-3.126-4.4-3.126-3.126-1.6-2.584-4.4-3.126-0.49-4.4-4.4-2.584
100.6951.8311.836-0.86-4.4-4.4-1.975-4.4-3.126-2.234-1.6-4.4-4.4-1.975-1.022-4.4
11-2.584-1.454-1.3280.404-0.658-0.938-1.771.69-0.788-0.721-1.0221.735-3.126-3.126-3.126-1.114
12-3.126-4.4-0.04-2.584-1.328-4.4-0.22-2.584-2.234-3.126-0.543-2.234-0.938-4.42.497-1.022
13-0.599-3.126-1.975-2.584-3.126-4.4-4.4-4.42.565-2.5840.167-1.454-1.454-2.584-1.454-2.584
142.16-0.0081.328-0.938-3.126-2.584-3.126-3.126-1.114-1.114-0.26-1.975-2.234-4.4-1.975-1.975
152.108-0.86-1.6-1.215-0.181-1.6-3.126-1.1141.241-0.938-0.86-0.788-1.454-1.975-1.454-2.234
160.2931.3771.89-0.181-0.599-1.454-1.77-1.6-1.328-0.938-1.77-2.584-1.328-1.022-0.938-1.77
17-0.392-0.302-1.022-0.439-0.040.504-1.60.7560.5420.613-0.221.093-1.975-1.114-1.328-0.599
180.14-0.9380.485-1.1140.663-0.074-0.490.083-0.543-1.215-1.77-0.5430.2690.4040.80.244