Model info
| Transcription factor | IRF4 (GeneCards) | ||||||||
| Model | IRF4_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdWdRvGGAASTGARAvh | ||||||||
| Best auROC (human) | 0.951 | ||||||||
| Best auROC (mouse) | 0.977 | ||||||||
| Peak sets in benchmark (human) | 19 | ||||||||
| Peak sets in benchmark (mouse) | 61 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Interferon-regulatory factors {3.5.3} | ||||||||
| TF subfamily | IRF-4 (LSIRF, NF-EM5, MUM1, Pip) {3.5.3.0.4} | ||||||||
| HGNC | HGNC:6119 | ||||||||
| EntrezGene | GeneID:3662 (SSTAR profile) | ||||||||
| UniProt ID | IRF4_HUMAN | ||||||||
| UniProt AC | Q15306 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | IRF4 expression | ||||||||
| ReMap ChIP-seq dataset list | IRF4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 177.0 | 88.0 | 162.0 | 73.0 |
| 02 | 265.0 | 56.0 | 96.0 | 83.0 |
| 03 | 326.0 | 36.0 | 56.0 | 82.0 |
| 04 | 244.0 | 30.0 | 97.0 | 129.0 |
| 05 | 118.0 | 63.0 | 287.0 | 32.0 |
| 06 | 256.0 | 73.0 | 152.0 | 19.0 |
| 07 | 107.0 | 2.0 | 380.0 | 11.0 |
| 08 | 15.0 | 8.0 | 476.0 | 1.0 |
| 09 | 485.0 | 9.0 | 2.0 | 4.0 |
| 10 | 480.0 | 2.0 | 5.0 | 13.0 |
| 11 | 29.0 | 219.0 | 240.0 | 12.0 |
| 12 | 34.0 | 42.0 | 11.0 | 413.0 |
| 13 | 18.0 | 8.0 | 472.0 | 2.0 |
| 14 | 450.0 | 2.0 | 42.0 | 6.0 |
| 15 | 346.0 | 14.0 | 130.0 | 10.0 |
| 16 | 468.0 | 16.0 | 9.0 | 7.0 |
| 17 | 84.0 | 222.0 | 175.0 | 19.0 |
| 18 | 104.0 | 138.0 | 47.0 | 211.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.344 | -0.346 | 0.256 | -0.529 |
| 02 | 0.745 | -0.788 | -0.26 | -0.403 |
| 03 | 0.951 | -1.215 | -0.788 | -0.415 |
| 04 | 0.663 | -1.389 | -0.25 | 0.031 |
| 05 | -0.057 | -0.673 | 0.824 | -1.328 |
| 06 | 0.711 | -0.529 | 0.193 | -1.818 |
| 07 | -0.153 | -3.573 | 1.104 | -2.311 |
| 08 | -2.034 | -2.584 | 1.328 | -3.903 |
| 09 | 1.347 | -2.484 | -3.573 | -3.126 |
| 10 | 1.336 | -3.573 | -2.961 | -2.163 |
| 11 | -1.421 | 0.555 | 0.646 | -2.234 |
| 12 | -1.27 | -1.067 | -2.311 | 1.187 |
| 13 | -1.868 | -2.584 | 1.32 | -3.573 |
| 14 | 1.272 | -3.573 | -1.067 | -2.819 |
| 15 | 1.01 | -2.096 | 0.039 | -2.394 |
| 16 | 1.311 | -1.975 | -2.484 | -2.694 |
| 17 | -0.392 | 0.569 | 0.333 | -1.818 |
| 18 | -0.181 | 0.098 | -0.958 | 0.519 |