Model info
| Transcription factor | Irf4 | ||||||||
| Model | IRF4_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddRWvvRGAAvTGARAvh | ||||||||
| Best auROC (human) | 0.951 | ||||||||
| Best auROC (mouse) | 0.981 | ||||||||
| Peak sets in benchmark (human) | 19 | ||||||||
| Peak sets in benchmark (mouse) | 61 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Interferon-regulatory factors {3.5.3} | ||||||||
| TF subfamily | IRF-4 (LSIRF, NF-EM5, MUM1, Pip) {3.5.3.0.4} | ||||||||
| MGI | MGI:1096873 | ||||||||
| EntrezGene | GeneID:16364 (SSTAR profile) | ||||||||
| UniProt ID | IRF4_MOUSE | ||||||||
| UniProt AC | Q64287 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Irf4 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 186.0 | 68.0 | 168.0 | 78.0 |
| 02 | 289.0 | 46.0 | 72.0 | 93.0 |
| 03 | 324.0 | 35.0 | 71.0 | 70.0 |
| 04 | 304.0 | 18.0 | 65.0 | 113.0 |
| 05 | 136.0 | 76.0 | 255.0 | 33.0 |
| 06 | 249.0 | 82.0 | 145.0 | 24.0 |
| 07 | 142.0 | 6.0 | 339.0 | 13.0 |
| 08 | 73.0 | 11.0 | 410.0 | 6.0 |
| 09 | 486.0 | 1.0 | 8.0 | 5.0 |
| 10 | 456.0 | 13.0 | 8.0 | 23.0 |
| 11 | 75.0 | 212.0 | 201.0 | 12.0 |
| 12 | 49.0 | 30.0 | 8.0 | 413.0 |
| 13 | 17.0 | 1.0 | 476.0 | 6.0 |
| 14 | 422.0 | 5.0 | 52.0 | 21.0 |
| 15 | 289.0 | 26.0 | 166.0 | 19.0 |
| 16 | 413.0 | 28.0 | 23.0 | 36.0 |
| 17 | 107.0 | 228.0 | 142.0 | 23.0 |
| 18 | 124.0 | 138.0 | 52.0 | 186.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.393 | -0.599 | 0.293 | -0.464 |
| 02 | 0.831 | -0.979 | -0.543 | -0.291 |
| 03 | 0.945 | -1.242 | -0.556 | -0.57 |
| 04 | 0.881 | -1.868 | -0.643 | -0.1 |
| 05 | 0.083 | -0.49 | 0.707 | -1.298 |
| 06 | 0.683 | -0.415 | 0.147 | -1.6 |
| 07 | 0.126 | -2.819 | 0.99 | -2.163 |
| 08 | -0.529 | -2.311 | 1.179 | -2.819 |
| 09 | 1.349 | -3.903 | -2.584 | -2.961 |
| 10 | 1.285 | -2.163 | -2.584 | -1.64 |
| 11 | -0.503 | 0.523 | 0.47 | -2.234 |
| 12 | -0.918 | -1.389 | -2.584 | 1.187 |
| 13 | -1.92 | -3.903 | 1.328 | -2.819 |
| 14 | 1.208 | -2.961 | -0.86 | -1.725 |
| 15 | 0.831 | -1.525 | 0.281 | -1.818 |
| 16 | 1.187 | -1.454 | -1.64 | -1.215 |
| 17 | -0.153 | 0.595 | 0.126 | -1.64 |
| 18 | -0.008 | 0.098 | -0.86 | 0.393 |