Transcription factor | Irf5 | ||||||||
Model | IRF5_MOUSE.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 20 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | KAAAGGAAAGCnAAAAGTGM | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 5 | ||||||||
TF family | Interferon-regulatory factors {3.5.3} | ||||||||
TF subfamily | IRF-5 {3.5.3.0.5} | ||||||||
MGI | MGI:1350924 | ||||||||
EntrezGene | GeneID:27056 (SSTAR profile) | ||||||||
UniProt ID | IRF5_MOUSE | ||||||||
UniProt AC | P56477 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Irf5 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 0.889 | 0.0 | 1.889 | 2.222 |
02 | 3.889 | 0.0 | 1.111 | 0.0 |
03 | 5.0 | 0.0 | 0.0 | 0.0 |
04 | 5.0 | 0.0 | 0.0 | 0.0 |
05 | 0.0 | 0.0 | 4.111 | 0.889 |
06 | 0.889 | 0.0 | 4.111 | 0.0 |
07 | 3.111 | 0.0 | 1.889 | 0.0 |
08 | 5.0 | 0.0 | 0.0 | 0.0 |
09 | 5.0 | 0.0 | 0.0 | 0.0 |
10 | 1.889 | 0.0 | 3.111 | 0.0 |
11 | 0.0 | 5.0 | 0.0 | 0.0 |
12 | 1.111 | 2.111 | 0.889 | 0.889 |
13 | 4.0 | 0.0 | 1.0 | 0.0 |
14 | 5.0 | 0.0 | 0.0 | 0.0 |
15 | 5.0 | 0.0 | 0.0 | 0.0 |
16 | 3.222 | 0.0 | 0.0 | 1.778 |
17 | 0.0 | 2.111 | 2.889 | 0.0 |
18 | 2.222 | 0.0 | 0.0 | 2.778 |
19 | 0.0 | 0.0 | 4.111 | 0.889 |
20 | 3.444 | 1.111 | 0.222 | 0.222 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.247 | -1.413 | 0.327 | 0.463 |
02 | 0.954 | -1.413 | -0.088 | -1.413 |
03 | 1.185 | -1.413 | -1.413 | -1.413 |
04 | 1.185 | -1.413 | -1.413 | -1.413 |
05 | -1.413 | -1.413 | 1.005 | -0.247 |
06 | -0.247 | -1.413 | 1.005 | -1.413 |
07 | 0.754 | -1.413 | 0.327 | -1.413 |
08 | 1.185 | -1.413 | -1.413 | -1.413 |
09 | 1.185 | -1.413 | -1.413 | -1.413 |
10 | 0.327 | -1.413 | 0.754 | -1.413 |
11 | -1.413 | 1.185 | -1.413 | -1.413 |
12 | -0.088 | 0.419 | -0.247 | -0.247 |
13 | 0.98 | -1.413 | -0.164 | -1.413 |
14 | 1.185 | -1.413 | -1.413 | -1.413 |
15 | 1.185 | -1.413 | -1.413 | -1.413 |
16 | 0.786 | -1.413 | -1.413 | 0.277 |
17 | -1.413 | 0.419 | 0.689 | -1.413 |
18 | 0.463 | -1.413 | -1.413 | 0.655 |
19 | -1.413 | -1.413 | 1.005 | -0.247 |
20 | 0.845 | -0.088 | -0.973 | -0.973 |