We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorIRF9
(GeneCards)
ModelIRF9_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length12
Quality
C
Motif rank
0
ConsensusGAAAbhGAAACT
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words5
TF familyInterferon-regulatory factors {3.5.3}
TF subfamilyIRF-9 (ISGF-3gamma) {3.5.3.0.9}
HGNCHGNC:6131
EntrezGeneGeneID:10379
(SSTAR profile)
UniProt IDIRF9_HUMAN
UniProt ACQ00978
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.469135
0.0005 6.2544249999999995
0.0001 7.698035
GTEx tissue expression atlas IRF9 expression
ReMap ChIP-seq dataset list IRF9 datasets
Motifs in JASPAR
PCM
ACGT
011.0710.03.9290.0
025.00.00.00.0
035.00.00.00.0
045.00.00.00.0
050.01.0712.8571.071
060.9523.0950.00.952
070.00.04.0480.952
085.00.00.00.0
095.00.00.00.0
105.00.00.00.0
110.03.0950.01.905
120.00.00.9524.048
PWM
ACGT
01-0.114-1.4130.964-1.413
021.185-1.413-1.413-1.413
031.185-1.413-1.413-1.413
041.185-1.413-1.413-1.413
05-1.413-0.1140.679-0.114
06-0.1990.75-1.413-0.199
07-1.413-1.4130.991-0.199
081.185-1.413-1.413-1.413
091.185-1.413-1.413-1.413
101.185-1.413-1.413-1.413
11-1.4130.75-1.4130.334
12-1.413-1.413-0.1990.991