Model info
| Transcription factor | Irf9 | ||||||||
| Model | IRF9_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | GAAAbhGAAACT | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 5 | ||||||||
| TF family | Interferon-regulatory factors {3.5.3} | ||||||||
| TF subfamily | IRF-9 (ISGF-3gamma) {3.5.3.0.9} | ||||||||
| MGI | MGI:107587 | ||||||||
| EntrezGene | GeneID:16391 (SSTAR profile) | ||||||||
| UniProt ID | IRF9_MOUSE | ||||||||
| UniProt AC | Q61179 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Irf9 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.071 | 0.0 | 3.929 | 0.0 |
| 02 | 5.0 | 0.0 | 0.0 | 0.0 |
| 03 | 5.0 | 0.0 | 0.0 | 0.0 |
| 04 | 5.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 1.071 | 2.857 | 1.071 |
| 06 | 0.952 | 3.095 | 0.0 | 0.952 |
| 07 | 0.0 | 0.0 | 4.048 | 0.952 |
| 08 | 5.0 | 0.0 | 0.0 | 0.0 |
| 09 | 5.0 | 0.0 | 0.0 | 0.0 |
| 10 | 5.0 | 0.0 | 0.0 | 0.0 |
| 11 | 0.0 | 3.095 | 0.0 | 1.905 |
| 12 | 0.0 | 0.0 | 0.952 | 4.048 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.114 | -1.413 | 0.964 | -1.413 |
| 02 | 1.185 | -1.413 | -1.413 | -1.413 |
| 03 | 1.185 | -1.413 | -1.413 | -1.413 |
| 04 | 1.185 | -1.413 | -1.413 | -1.413 |
| 05 | -1.413 | -0.114 | 0.679 | -0.114 |
| 06 | -0.199 | 0.75 | -1.413 | -0.199 |
| 07 | -1.413 | -1.413 | 0.991 | -0.199 |
| 08 | 1.185 | -1.413 | -1.413 | -1.413 |
| 09 | 1.185 | -1.413 | -1.413 | -1.413 |
| 10 | 1.185 | -1.413 | -1.413 | -1.413 |
| 11 | -1.413 | 0.75 | -1.413 | 0.334 |
| 12 | -1.413 | -1.413 | -0.199 | 0.991 |