We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorIRX3
(GeneCards)
ModelIRX3_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensushndYWTGTWhd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words383
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyIRX (Iroquois) {3.1.4.1}
HGNCHGNC:14360
EntrezGeneGeneID:79191
(SSTAR profile)
UniProt IDIRX3_HUMAN
UniProt ACP78415
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.7742
0.0005 6.462384999999999
0.0001 7.69877
GTEx tissue expression atlas IRX3 expression
ReMap ChIP-seq dataset list IRX3 datasets
Motifs in JASPAR
PCM
ACGT
01143.038.035.0165.0
0281.7579.7576.75142.75
03151.7528.7535.75164.75
0419.25255.2515.2591.25
05252.02.059.068.0
060.02.00.0379.0
075.00.0372.04.0
080.00.00.0381.0
09178.2518.757.75176.25
10155.578.571.575.5
1189.554.557.5179.5
PWM
ACGT
010.401-0.896-0.9750.543
02-0.15-0.175-0.2120.399
030.46-1.163-0.9550.541
04-1.540.976-1.754-0.042
050.963-3.323-0.47-0.331
06-4.176-3.323-4.1761.369
07-2.702-4.1761.351-2.87
08-4.176-4.176-4.1761.375
090.62-1.565-2.3490.608
100.484-0.19-0.282-0.228
11-0.061-0.547-0.4950.626