We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTCF4
(GeneCards)
ModelITF2_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
C
Motif rank
0
ConsensusvnvnvvnnvCAGSTGb
Best auROC (human)0.968
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words471
TF familyE2A-related factors {1.2.1}
TF subfamilySEF2 (E2-2, TCF-4, ITF-2) {1.2.1.0.2}
HGNCHGNC:11634
EntrezGeneGeneID:6925
(SSTAR profile)
UniProt IDITF2_HUMAN
UniProt ACP15884
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.029510000000002
0.0005 11.00386
0.0001 14.97176
GTEx tissue expression atlas TCF4 expression
ReMap ChIP-seq dataset list TCF4 datasets
Motifs in JASPAR
MA0830.1 (TCF4; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0152.09.035.07.067.035.010.074.033.015.035.031.08.08.034.017.0
0231.038.083.08.026.027.04.010.018.032.052.012.011.024.080.014.0
0312.022.042.010.041.044.012.024.047.063.056.053.06.020.08.010.0
0426.07.063.010.071.027.026.025.039.021.049.09.019.011.058.09.0
0529.014.096.016.025.014.011.016.051.030.085.030.03.013.030.07.0
0632.013.045.018.032.014.09.016.052.063.075.032.05.014.031.019.0
0731.030.045.015.030.040.06.028.046.037.058.019.017.020.033.015.0
0829.020.073.02.071.036.016.04.026.051.063.02.017.05.054.01.0
095.0133.04.01.02.0109.01.00.03.0199.04.00.01.08.00.00.0
108.00.03.00.0435.01.011.02.07.00.02.00.01.00.00.00.0
112.018.0425.06.00.00.01.00.00.02.014.00.00.00.02.00.0
120.02.00.00.00.017.03.00.053.0232.0153.04.00.05.01.00.0
134.01.02.046.013.04.05.0234.08.00.04.0145.01.00.00.03.0
141.00.024.01.01.00.01.03.02.01.08.00.03.02.0415.08.0
153.01.03.00.00.01.01.01.037.0161.0146.0104.02.04.02.04.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.565-1.1540.173-1.3940.8170.173-1.0530.9160.115-0.660.1730.053-1.267-1.2670.144-0.538
020.0530.2551.03-1.267-0.12-0.083-1.915-1.053-0.4820.0850.565-0.877-0.961-0.1990.994-0.727
03-0.877-0.2850.354-1.0530.330.4-0.877-0.1990.4650.7560.6390.584-1.539-0.378-1.267-1.053
04-0.12-1.3940.756-1.0530.875-0.083-0.12-0.1590.28-0.330.506-1.154-0.429-0.9610.674-1.154
05-0.013-0.7271.175-0.597-0.159-0.727-0.961-0.5970.5460.0211.0540.021-2.174-0.7990.021-1.394
060.085-0.7990.422-0.4820.085-0.727-1.154-0.5970.5650.7560.9290.085-1.71-0.7270.053-0.429
070.0530.0210.422-0.660.0210.305-1.539-0.0470.4440.2280.674-0.429-0.538-0.3780.115-0.66
08-0.013-0.3780.903-2.5240.8750.201-0.597-1.915-0.120.5460.756-2.524-0.538-1.710.603-3.068
09-1.711.5-1.915-3.068-2.5241.302-3.068-4.349-2.1741.902-1.915-4.349-3.068-1.267-4.349-4.349
10-1.267-4.349-2.174-4.3492.683-3.068-0.961-2.524-1.394-4.349-2.524-4.349-3.068-4.349-4.349-4.349
11-2.524-0.4822.66-1.539-4.349-4.349-3.068-4.349-4.349-2.524-0.727-4.349-4.349-4.349-2.524-4.349
12-4.349-2.524-4.349-4.349-4.349-0.538-2.174-4.3490.5842.0551.64-1.915-4.349-1.71-3.068-4.349
13-1.915-3.068-2.5240.444-0.799-1.915-1.712.064-1.267-4.349-1.9151.586-3.068-4.349-4.349-2.174
14-3.068-4.349-0.199-3.068-3.068-4.349-3.068-2.174-2.524-3.068-1.267-4.349-2.174-2.5242.636-1.267
15-2.174-3.068-2.174-4.349-4.349-3.068-3.068-3.0680.2281.6911.5931.255-2.524-1.915-2.524-1.915