Transcription factor | Tcf4 | ||||||||
Model | ITF2_MOUSE.H11MO.0.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 9 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | vCAGGTGYd | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 553 | ||||||||
TF family | E2A-related factors {1.2.1} | ||||||||
TF subfamily | SEF2 (E2-2, TCF-4, ITF-2, MITF) {1.2.1.0.2} | ||||||||
MGI | MGI:98506 | ||||||||
EntrezGene | GeneID:21413 (SSTAR profile) | ||||||||
UniProt ID | ITF2_MOUSE | ||||||||
UniProt AC | Q60722 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Tcf4 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 150.587 | 155.415 | 146.992 | 0.526 |
02 | 0.0 | 453.52 | 0.0 | 0.0 |
03 | 453.52 | 0.0 | 0.0 | 0.0 |
04 | 0.0 | 0.0 | 453.52 | 0.0 |
05 | 0.0 | 0.0 | 453.52 | 0.0 |
06 | 0.0 | 0.0 | 0.526 | 452.994 |
07 | 0.0 | 0.0 | 453.52 | 0.0 |
08 | 11.302 | 299.028 | 0.0 | 143.19 |
09 | 169.144 | 36.455 | 157.253 | 90.668 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.281 | 0.312 | 0.257 | -4.024 |
02 | -4.319 | 1.376 | -4.319 | -4.319 |
03 | 1.376 | -4.319 | -4.319 | -4.319 |
04 | -4.319 | -4.319 | 1.376 | -4.319 |
05 | -4.319 | -4.319 | 1.376 | -4.319 |
06 | -4.319 | -4.319 | -4.024 | 1.375 |
07 | -4.319 | -4.319 | 1.376 | -4.319 |
08 | -2.192 | 0.961 | -4.319 | 0.231 |
09 | 0.396 | -1.107 | 0.323 | -0.22 |