We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorJDP2
(GeneCards)
ModelJDP2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length12
Quality
D
Motif rank
0
ConsensusbRATGACGTCAb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words2851
TF familyFos-related factors {1.1.2}
TF subfamilyATF-3-like factors {1.1.2.2}
HGNCHGNC:17546
EntrezGeneGeneID:122953
(SSTAR profile)
UniProt IDJDP2_HUMAN
UniProt ACQ8WYK2
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.010415
0.0005 1.40107
0.0001 4.26419
GTEx tissue expression atlas JDP2 expression
ReMap ChIP-seq dataset list JDP2 datasets
Motifs in JASPAR
PCM
ACGT
01400.863770.315686.6921177.231
02446.614357.5671972.795258.125
032553.82470.781366.18144.314
045.5561.6482.4143025.483
054.9451.8032997.89230.461
063031.1131.6111.6110.766
073.292941.1116.52584.175
0824.991.463004.8943.757
0911.94217.98814.9922990.179
10477.6652455.656.7845.055
112881.45348.12753.56651.955
12136.1091156.326359.751382.916
PWM
ACGT
01-0.6360.015-0.10.438
02-0.528-0.7490.954-1.073
031.212-2.347-0.726-2.799
04-4.611-5.339-5.1491.381
05-4.696-5.2971.372-3.154
061.383-5.349-5.349-5.615
07-4.9681.353-4.491-2.178
08-3.339-5.3921.374-4.883
09-3.999-3.639-3.8011.369
10-0.4611.173-2.56-2.783
111.332-2.72-2.617-2.646
12-1.7060.42-0.7430.599