Model info
| Transcription factor | JDP2 (GeneCards) | ||||||||
| Model | JDP2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bRATGACGTCAb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 2851 | ||||||||
| TF family | Fos-related factors {1.1.2} | ||||||||
| TF subfamily | ATF-3-like factors {1.1.2.2} | ||||||||
| HGNC | HGNC:17546 | ||||||||
| EntrezGene | GeneID:122953 (SSTAR profile) | ||||||||
| UniProt ID | JDP2_HUMAN | ||||||||
| UniProt AC | Q8WYK2 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | JDP2 expression | ||||||||
| ReMap ChIP-seq dataset list | JDP2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 400.863 | 770.315 | 686.692 | 1177.231 |
| 02 | 446.614 | 357.567 | 1972.795 | 258.125 |
| 03 | 2553.824 | 70.781 | 366.181 | 44.314 |
| 04 | 5.556 | 1.648 | 2.414 | 3025.483 |
| 05 | 4.945 | 1.803 | 2997.892 | 30.461 |
| 06 | 3031.113 | 1.611 | 1.611 | 0.766 |
| 07 | 3.29 | 2941.111 | 6.525 | 84.175 |
| 08 | 24.99 | 1.46 | 3004.894 | 3.757 |
| 09 | 11.942 | 17.988 | 14.992 | 2990.179 |
| 10 | 477.665 | 2455.6 | 56.78 | 45.055 |
| 11 | 2881.453 | 48.127 | 53.566 | 51.955 |
| 12 | 136.109 | 1156.326 | 359.75 | 1382.916 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.636 | 0.015 | -0.1 | 0.438 |
| 02 | -0.528 | -0.749 | 0.954 | -1.073 |
| 03 | 1.212 | -2.347 | -0.726 | -2.799 |
| 04 | -4.611 | -5.339 | -5.149 | 1.381 |
| 05 | -4.696 | -5.297 | 1.372 | -3.154 |
| 06 | 1.383 | -5.349 | -5.349 | -5.615 |
| 07 | -4.968 | 1.353 | -4.491 | -2.178 |
| 08 | -3.339 | -5.392 | 1.374 | -4.883 |
| 09 | -3.999 | -3.639 | -3.801 | 1.369 |
| 10 | -0.461 | 1.173 | -2.56 | -2.783 |
| 11 | 1.332 | -2.72 | -2.617 | -2.646 |
| 12 | -1.706 | 0.42 | -0.743 | 0.599 |