We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorKLF1
(GeneCards)
ModelKLF1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusdGGGYGKGGShbbS
Best auROC (human)0.944
Best auROC (mouse)0.973
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)6
Aligned words492
TF familyThree-zinc finger Krüppel-related factors {2.3.1}
TF subfamilyKrüppel-like factors {2.3.1.2}
HGNCHGNC:6345
EntrezGeneGeneID:10661
(SSTAR profile)
UniProt IDKLF1_HUMAN
UniProt ACQ13351
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.37251
0.0005 3.55896
0.0001 5.994809999999999
GTEx tissue expression atlas KLF1 expression
ReMap ChIP-seq dataset list KLF1 datasets
Motifs in JASPAR
MA0493.1 (Klf1; Mus musculus)
PCM
ACGT
01166.016.0189.0118.0
022.01.0484.02.0
031.02.0483.03.0
040.00.0488.01.0
0545.0258.00.0186.0
067.00.0478.04.0
0712.05.0262.0210.0
0819.02.0442.026.0
0912.011.0422.044.0
1030.0335.082.042.0
1182.0224.046.0137.0
1270.097.0231.091.0
1351.099.0259.080.0
1455.079.0305.050.0
PWM
ACGT
010.303-1.9540.431-0.035
02-3.552-3.8831.367-3.552
03-3.883-3.5521.365-3.304
04-4.382-4.3821.375-3.883
05-0.9780.74-4.3820.415
06-2.673-4.3821.354-3.105
07-2.212-2.9390.7560.536
08-1.796-3.5521.276-1.503
09-2.212-2.2891.23-1.0
10-1.3671.0-0.393-1.045
11-0.3930.6-0.9570.113
12-0.548-0.2280.63-0.291
13-0.857-0.2080.744-0.417
14-0.784-0.430.907-0.876