Model info
| Transcription factor | Klf1 | ||||||||
| Model | KLF1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dGGGYGKGGShbSK | ||||||||
| Best auROC (human) | 0.893 | ||||||||
| Best auROC (mouse) | 0.982 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 6 | ||||||||
| Aligned words | 454 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Krüppel-like factors {2.3.1.2} | ||||||||
| MGI | MGI:1342771 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | KLF1_MOUSE | ||||||||
| UniProt AC | P46099 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Klf1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 159.0 | 13.0 | 130.0 | 152.0 |
| 02 | 2.0 | 0.0 | 447.0 | 5.0 |
| 03 | 2.0 | 2.0 | 450.0 | 0.0 |
| 04 | 3.0 | 0.0 | 450.0 | 1.0 |
| 05 | 50.0 | 198.0 | 1.0 | 205.0 |
| 06 | 4.0 | 0.0 | 447.0 | 3.0 |
| 07 | 11.0 | 4.0 | 224.0 | 215.0 |
| 08 | 13.0 | 3.0 | 414.0 | 24.0 |
| 09 | 9.0 | 8.0 | 414.0 | 23.0 |
| 10 | 31.0 | 293.0 | 72.0 | 58.0 |
| 11 | 81.0 | 182.0 | 61.0 | 130.0 |
| 12 | 45.0 | 58.0 | 242.0 | 109.0 |
| 13 | 21.0 | 78.0 | 282.0 | 73.0 |
| 14 | 33.0 | 51.0 | 292.0 | 78.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.333 | -2.069 | 0.134 | 0.289 |
| 02 | -3.484 | -4.32 | 1.361 | -2.869 |
| 03 | -3.484 | -3.484 | 1.367 | -4.32 |
| 04 | -3.235 | -4.32 | 1.367 | -3.817 |
| 05 | -0.803 | 0.551 | -3.817 | 0.585 |
| 06 | -3.035 | -4.32 | 1.361 | -3.235 |
| 07 | -2.217 | -3.035 | 0.673 | 0.633 |
| 08 | -2.069 | -3.235 | 1.284 | -1.505 |
| 09 | -2.391 | -2.491 | 1.284 | -1.545 |
| 10 | -1.263 | 0.94 | -0.448 | -0.659 |
| 11 | -0.332 | 0.467 | -0.61 | 0.134 |
| 12 | -0.905 | -0.659 | 0.75 | -0.04 |
| 13 | -1.63 | -0.369 | 0.902 | -0.434 |
| 14 | -1.203 | -0.784 | 0.937 | -0.369 |