We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorKLF4
(GeneCards)
ModelKLF4_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusdGGGYGKGGY
Best auROC (human)0.888
Best auROC (mouse)0.983
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)34
Aligned words500
TF familyThree-zinc finger Krüppel-related factors {2.3.1}
TF subfamilyKrüppel-like factors {2.3.1.2}
HGNCHGNC:6348
EntrezGeneGeneID:9314
(SSTAR profile)
UniProt IDKLF4_HUMAN
UniProt ACO43474
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.9184349999999997
0.0005 4.032195
0.0001 6.46372
GTEx tissue expression atlas KLF4 expression
ReMap ChIP-seq dataset list KLF4 datasets
Motifs in JASPAR
PCM
ACGT
01210.010.0102.0178.0
024.00.0494.02.0
031.00.0496.03.0
046.02.0489.03.0
0513.0222.02.0263.0
062.02.0496.00.0
072.02.0219.0277.0
0825.08.0443.024.0
097.019.0441.033.0
1027.0314.034.0125.0
PWM
ACGT
010.514-2.394-0.2010.35
02-3.126-4.41.365-3.573
03-3.903-4.41.369-3.325
04-2.819-3.5731.355-3.325
05-2.1630.569-3.5730.737
06-3.573-3.5731.369-4.4
07-3.573-3.5730.5550.789
08-1.561-2.5841.256-1.6
09-2.694-1.8181.252-1.298
10-1.4890.914-1.270.0