We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorKLF5
(GeneCards)
ModelKLF5_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusdGGGYGKGGYnKdn
Best auROC (human)0.969
Best auROC (mouse)0.974
Peak sets in benchmark (human)32
Peak sets in benchmark (mouse)23
Aligned words502
TF familyThree-zinc finger Krüppel-related factors {2.3.1}
TF subfamilyKrüppel-like factors {2.3.1.2}
HGNCHGNC:6349
EntrezGeneGeneID:688
(SSTAR profile)
UniProt IDKLF5_HUMAN
UniProt ACQ13887
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.69721
0.0005 4.732659999999999
0.0001 6.855765
GTEx tissue expression atlas KLF5 expression
ReMap ChIP-seq dataset list KLF5 datasets
Motifs in JASPAR
MA0599.1 (KLF5; Homo sapiens)
PCM
ACGT
01211.017.0102.0170.0
0223.02.0472.03.0
034.04.0484.08.0
0412.018.0465.05.0
0589.092.04.0315.0
0623.01.0471.05.0
0720.05.0272.0203.0
088.00.0482.010.0
0925.015.0415.045.0
1053.0317.055.075.0
11124.091.096.0189.0
1252.068.0303.077.0
1377.062.0251.0110.0
1474.0105.0247.074.0
PWM
ACGT
010.519-1.92-0.2010.304
02-1.64-3.5731.32-3.325
03-3.126-3.1261.345-2.584
04-2.234-1.8681.305-2.961
05-0.335-0.302-3.1260.917
06-1.64-3.9031.317-2.961
07-1.77-2.9610.7710.48
08-2.584-4.41.34-2.394
09-1.561-2.0341.191-1.0
10-0.8410.923-0.805-0.503
11-0.008-0.313-0.260.409
12-0.86-0.5990.878-0.477
13-0.477-0.6890.691-0.126
14-0.516-0.1720.675-0.516