Model info
| Transcription factor | Klf5 | ||||||||
| Model | KLF5_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRvvvdGGGYGKGGM | ||||||||
| Best auROC (human) | 0.943 | ||||||||
| Best auROC (mouse) | 0.985 | ||||||||
| Peak sets in benchmark (human) | 32 | ||||||||
| Peak sets in benchmark (mouse) | 23 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Krüppel-like factors {2.3.1.2} | ||||||||
| MGI | MGI:1338056 | ||||||||
| EntrezGene | GeneID:12224 (SSTAR profile) | ||||||||
| UniProt ID | KLF5_MOUSE | ||||||||
| UniProt AC | Q9Z0Z7 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Klf5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 121.0 | 55.0 | 238.0 | 85.0 |
| 02 | 63.0 | 45.0 | 330.0 | 61.0 |
| 03 | 99.0 | 74.0 | 275.0 | 51.0 |
| 04 | 81.0 | 89.0 | 271.0 | 58.0 |
| 05 | 79.0 | 231.0 | 145.0 | 44.0 |
| 06 | 231.0 | 11.0 | 85.0 | 172.0 |
| 07 | 22.0 | 0.0 | 473.0 | 4.0 |
| 08 | 2.0 | 1.0 | 495.0 | 1.0 |
| 09 | 5.0 | 4.0 | 488.0 | 2.0 |
| 10 | 131.0 | 154.0 | 1.0 | 213.0 |
| 11 | 17.0 | 5.0 | 471.0 | 6.0 |
| 12 | 43.0 | 15.0 | 304.0 | 137.0 |
| 13 | 21.0 | 3.0 | 471.0 | 4.0 |
| 14 | 29.0 | 19.0 | 426.0 | 25.0 |
| 15 | 101.0 | 297.0 | 39.0 | 62.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.03 | -0.804 | 0.64 | -0.378 |
| 02 | -0.671 | -0.998 | 0.965 | -0.703 |
| 03 | -0.228 | -0.514 | 0.784 | -0.877 |
| 04 | -0.425 | -0.333 | 0.769 | -0.752 |
| 05 | -0.45 | 0.61 | 0.149 | -1.02 |
| 06 | 0.61 | -2.309 | -0.378 | 0.318 |
| 07 | -1.679 | -4.398 | 1.324 | -3.124 |
| 08 | -3.571 | -3.901 | 1.369 | -3.901 |
| 09 | -2.959 | -3.124 | 1.355 | -3.571 |
| 10 | 0.048 | 0.208 | -3.901 | 0.53 |
| 11 | -1.918 | -2.959 | 1.319 | -2.817 |
| 12 | -1.042 | -2.032 | 0.883 | 0.093 |
| 13 | -1.723 | -3.323 | 1.319 | -3.124 |
| 14 | -1.419 | -1.816 | 1.219 | -1.56 |
| 15 | -0.208 | 0.86 | -1.136 | -0.687 |