We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLBX2
(GeneCards)
ModelLBX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusvYTAATTRGnb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1425
TF familyNK-related factors {3.1.2}
TF subfamilyLBX {3.1.2.10}
HGNCHGNC:15525
EntrezGeneGeneID:85474
(SSTAR profile)
UniProt IDLBX2_HUMAN
UniProt ACQ6XYB7
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.514234999999999
0.0005 5.78738
0.0001 8.09357
GTEx tissue expression atlas LBX2 expression
ReMap ChIP-seq dataset list LBX2 datasets
Motifs in JASPAR
PCM
ACGT
01364.0245.0648.0155.0
0280.75514.7572.75743.75
032.01.014.01395.0
041409.252.250.250.25
051408.00.02.02.0
060.011.03.01398.0
0732.06.052.01322.0
08781.7529.75583.7516.75
0963.2572.251230.2546.25
10186.75320.75489.75414.75
11142.25476.25211.25582.25
PWM
ACGT
010.031-0.3630.605-0.817
02-1.4580.376-1.560.743
03-4.533-4.837-3.1111.37
041.381-4.47-5.147-5.147
051.38-5.277-4.533-4.533
06-5.277-3.321-4.31.373
07-2.351-3.816-1.8861.317
080.792-2.420.501-2.95
09-1.696-1.5671.245-1.999
10-0.632-0.0950.3260.16
11-0.9010.298-0.510.498