Transcription factor | Lef1 | ||||||||
Model | LEF1_MOUSE.H11MO.0.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | bSYTTTSWhnKbhh | ||||||||
Best auROC (human) | 0.876 | ||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | 20 | ||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 456 | ||||||||
TF family | TCF-7-related factors {4.1.3} | ||||||||
TF subfamily | LEF-1 (TCF-1alpha) [1] {4.1.3.0.4} | ||||||||
MGI | MGI:96770 | ||||||||
EntrezGene | GeneID:16842 (SSTAR profile) | ||||||||
UniProt ID | LEF1_MOUSE | ||||||||
UniProt AC | P27782 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Lef1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 35.0 | 119.0 | 125.0 | 177.0 |
02 | 15.0 | 290.0 | 84.0 | 67.0 |
03 | 8.0 | 323.0 | 6.0 | 119.0 |
04 | 56.0 | 21.0 | 9.0 | 370.0 |
05 | 1.0 | 63.0 | 16.0 | 376.0 |
06 | 1.0 | 6.0 | 15.0 | 434.0 |
07 | 20.0 | 194.0 | 237.0 | 5.0 |
08 | 208.0 | 63.0 | 7.0 | 178.0 |
09 | 127.0 | 76.0 | 72.0 | 181.0 |
10 | 130.0 | 87.0 | 92.0 | 147.0 |
11 | 19.0 | 59.0 | 68.0 | 310.0 |
12 | 18.0 | 142.0 | 175.0 | 121.0 |
13 | 53.0 | 210.0 | 41.0 | 152.0 |
14 | 143.0 | 101.0 | 47.0 | 165.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.151 | 0.042 | 0.091 | 0.435 |
02 | -1.944 | 0.926 | -0.301 | -0.522 |
03 | -2.495 | 1.033 | -2.731 | 0.042 |
04 | -0.697 | -1.635 | -2.395 | 1.168 |
05 | -3.821 | -0.582 | -1.886 | 1.184 |
06 | -3.821 | -2.731 | -1.944 | 1.327 |
07 | -1.68 | 0.526 | 0.725 | -2.873 |
08 | 0.595 | -0.582 | -2.606 | 0.441 |
09 | 0.107 | -0.399 | -0.452 | 0.457 |
10 | 0.13 | -0.266 | -0.211 | 0.251 |
11 | -1.728 | -0.646 | -0.508 | 0.992 |
12 | -1.778 | 0.217 | 0.424 | 0.059 |
13 | -0.751 | 0.605 | -0.999 | 0.284 |
14 | 0.224 | -0.119 | -0.867 | 0.366 |