We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLHX2
(GeneCards)
ModelLHX2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnYTAATKRbbhn
Best auROC (human)0.831
Best auROC (mouse)0.938
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)12
Aligned words501
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-2-like factors {3.1.5.3}
HGNCHGNC:6594
EntrezGeneGeneID:9355
(SSTAR profile)
UniProt IDLHX2_HUMAN
UniProt ACP50458
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.888760000000001
0.0005 13.385525000000001
0.0001 16.71477
GTEx tissue expression atlas LHX2 expression
ReMap ChIP-seq dataset list LHX2 datasets
Motifs in JASPAR
MA0700.1 (LHX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.064.07.053.06.043.00.056.06.044.02.049.011.040.09.0105.0
020.00.00.027.00.00.00.0191.00.00.00.018.07.00.04.0252.0
037.00.00.00.00.00.00.00.04.00.00.00.0488.00.00.00.0
04499.00.00.00.00.00.00.00.00.00.00.00.00.00.00.00.0
050.05.02.0492.00.00.00.00.00.00.00.00.00.00.00.00.0
060.00.00.00.00.00.01.04.00.00.01.01.06.08.0135.0343.0
075.00.01.00.08.00.00.00.0124.00.010.03.0191.04.0150.03.0
0828.051.0204.045.00.01.00.03.013.042.080.026.01.00.05.00.0
095.019.05.013.016.038.02.038.040.093.069.087.04.018.018.034.0
1016.014.09.026.063.045.04.056.028.023.06.037.018.046.027.081.0
1128.036.040.021.037.041.01.049.022.012.03.09.018.072.038.072.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.9730.713-1.4520.525-1.5980.318-4.3980.58-1.5980.341-2.5820.447-1.020.246-1.2131.205
02-4.398-4.398-4.398-0.142-4.398-4.398-4.3981.802-4.398-4.398-4.398-0.541-1.452-4.398-1.9732.079
03-1.452-4.398-4.398-4.398-4.398-4.398-4.398-4.398-1.973-4.398-4.398-4.3982.739-4.398-4.398-4.398
042.761-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398
05-4.398-1.768-2.5822.747-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398
06-4.398-4.398-4.398-4.398-4.398-4.398-3.124-1.973-4.398-4.398-3.124-3.124-1.598-1.3261.4562.386
07-1.768-4.398-3.124-4.398-1.326-4.398-4.398-4.3981.371-4.398-1.112-2.2321.802-1.9731.561-2.232
08-0.1060.4871.8680.363-4.398-3.124-4.398-2.232-0.8580.2940.934-0.179-3.124-4.398-1.768-4.398
09-1.768-0.488-1.768-0.858-0.6560.195-2.5820.1950.2461.0840.7871.018-1.973-0.541-0.5410.085
10-0.656-0.786-1.213-0.1790.6970.363-1.9730.58-0.106-0.3-1.5980.169-0.5410.385-0.1420.947
11-0.1060.1420.246-0.390.1690.271-3.1240.447-0.344-0.936-2.232-1.213-0.5410.830.1950.83