Check the newest release v12
Model info
Transcription factorLHX2
(GeneCards)
ModelLHX2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnYTAATKRbbhn
Best auROC (human)0.831
Best auROC (mouse)0.938
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)12
Aligned words501
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-2-like factors {3.1.5.3}
HGNCHGNC:6594
EntrezGeneGeneID:9355
(SSTAR profile)
UniProt IDLHX2_HUMAN
UniProt ACP50458
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.888760000000001
0.0005 13.385525000000001
0.0001 16.71477
GTEx tissue expression atlas LHX2 expression
ReMap ChIP-seq dataset list LHX2 datasets
Motifs in JASPAR
MA0700.1 (LHX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.064.07.053.06.043.00.056.06.044.02.049.011.040.09.0105.0
020.00.00.027.00.00.00.0191.00.00.00.018.07.00.04.0252.0
037.00.00.00.00.00.00.00.04.00.00.00.0488.00.00.00.0
04499.00.00.00.00.00.00.00.00.00.00.00.00.00.00.00.0
050.05.02.0492.00.00.00.00.00.00.00.00.00.00.00.00.0
060.00.00.00.00.00.01.04.00.00.01.01.06.08.0135.0343.0
075.00.01.00.08.00.00.00.0124.00.010.03.0191.04.0150.03.0
0828.051.0204.045.00.01.00.03.013.042.080.026.01.00.05.00.0
095.019.05.013.016.038.02.038.040.093.069.087.04.018.018.034.0
1016.014.09.026.063.045.04.056.028.023.06.037.018.046.027.081.0
1128.036.040.021.037.041.01.049.022.012.03.09.018.072.038.072.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.9730.713-1.4520.525-1.5980.318-4.3980.58-1.5980.341-2.5820.447-1.020.246-1.2131.205
02-4.398-4.398-4.398-0.142-4.398-4.398-4.3981.802-4.398-4.398-4.398-0.541-1.452-4.398-1.9732.079
03-1.452-4.398-4.398-4.398-4.398-4.398-4.398-4.398-1.973-4.398-4.398-4.3982.739-4.398-4.398-4.398
042.761-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398
05-4.398-1.768-2.5822.747-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398
06-4.398-4.398-4.398-4.398-4.398-4.398-3.124-1.973-4.398-4.398-3.124-3.124-1.598-1.3261.4562.386
07-1.768-4.398-3.124-4.398-1.326-4.398-4.398-4.3981.371-4.398-1.112-2.2321.802-1.9731.561-2.232
08-0.1060.4871.8680.363-4.398-3.124-4.398-2.232-0.8580.2940.934-0.179-3.124-4.398-1.768-4.398
09-1.768-0.488-1.768-0.858-0.6560.195-2.5820.1950.2461.0840.7871.018-1.973-0.541-0.5410.085
10-0.656-0.786-1.213-0.1790.6970.363-1.9730.58-0.106-0.3-1.5980.169-0.5410.385-0.1420.947
11-0.1060.1420.246-0.390.1690.271-3.1240.447-0.344-0.936-2.232-1.213-0.5410.830.1950.83