We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLHX2
(GeneCards)
ModelLHX2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusbbYTAATTRvhb
Best auROC (human)0.826
Best auROC (mouse)0.931
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)12
Aligned words430
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-2-like factors {3.1.5.3}
HGNCHGNC:6594
EntrezGeneGeneID:9355
(SSTAR profile)
UniProt IDLHX2_HUMAN
UniProt ACP50458
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.846220000000001
0.0005 6.620625
0.0001 7.96899
GTEx tissue expression atlas LHX2 expression
ReMap ChIP-seq dataset list LHX2 datasets
Motifs in JASPAR
MA0700.1 (LHX2; Homo sapiens)
PCM
ACGT
0157.076.0102.0195.0
0240.0113.0137.0140.0
0348.0186.07.0189.0
0412.05.00.0413.0
05333.076.017.04.0
06412.012.01.05.0
070.09.09.0412.0
084.06.0102.0318.0
09249.03.0152.026.0
1074.097.0212.047.0
1176.0104.054.0196.0
1238.092.0104.0196.0
PWM
ACGT
01-0.622-0.341-0.0520.589
02-0.9650.0490.2390.261
03-0.7890.542-2.550.558
04-2.088-2.817-4.2751.336
051.121-0.341-1.773-2.984
061.333-2.088-3.769-2.817
07-4.275-2.339-2.3391.333
08-2.984-2.674-0.0521.075
090.832-3.1840.342-1.377
10-0.367-0.1010.672-0.81
11-0.341-0.033-0.6750.594
12-1.015-0.153-0.0330.594