We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLhx2
ModelLHX2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusnhTAATKAGvn
Best auROC (human)0.804
Best auROC (mouse)0.934
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)12
Aligned words531
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-2-like factors {3.1.5.3}
MGIMGI:96785
EntrezGeneGeneID:16870
(SSTAR profile)
UniProt IDLHX2_MOUSE
UniProt ACQ9Z0S2
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.502279999999999
0.0005 12.461955
0.0001 16.28978
GTEx tissue expression atlas Lhx2 expression
Motifs in JASPAR
MA0700.1 (LHX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
019.053.017.057.08.038.06.038.049.040.014.039.017.038.07.069.0
0225.00.01.057.07.00.00.0162.00.00.01.043.06.03.03.0191.0
0337.00.01.00.03.00.00.00.05.00.00.00.0451.01.00.01.0
04495.00.00.01.01.00.00.00.01.00.00.00.01.00.00.00.0
056.01.03.0488.00.00.00.00.00.00.00.00.00.00.00.01.0
061.00.05.00.00.00.01.00.00.01.02.00.03.016.0209.0261.0
072.00.02.00.016.00.01.00.0201.00.016.00.0175.02.082.02.0
0819.05.0319.051.00.00.02.00.06.010.080.05.00.00.02.00.0
093.08.010.04.01.08.00.06.099.0148.0109.047.08.016.029.03.0
1053.019.018.021.061.042.07.070.050.048.031.019.012.013.015.020.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.2130.525-0.5970.597-1.3260.195-1.5980.1950.4470.246-0.7860.221-0.5970.195-1.4520.787
02-0.218-4.398-3.1240.597-1.452-4.398-4.3981.638-4.398-4.398-3.1240.318-1.598-2.232-2.2321.802
030.169-4.398-3.124-4.398-2.232-4.398-4.398-4.398-1.768-4.398-4.398-4.3982.66-3.124-4.398-3.124
042.753-4.398-4.398-3.124-3.124-4.398-4.398-4.398-3.124-4.398-4.398-4.398-3.124-4.398-4.398-4.398
05-1.598-3.124-2.2322.739-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-3.124
06-3.124-4.398-1.768-4.398-4.398-4.398-3.124-4.398-4.398-3.124-2.582-4.398-2.232-0.6561.8922.114
07-2.582-4.398-2.582-4.398-0.656-4.398-3.124-4.3981.853-4.398-0.656-4.3981.715-2.5820.959-2.582
08-0.488-1.7682.3140.487-4.398-4.398-2.582-4.398-1.598-1.1120.934-1.768-4.398-4.398-2.582-4.398
09-2.232-1.326-1.112-1.973-3.124-1.326-4.398-1.5981.1471.5471.2430.406-1.326-0.656-0.072-2.232
100.525-0.488-0.541-0.390.6650.294-1.4520.8020.4670.427-0.006-0.488-0.936-0.858-0.719-0.437