Transcription factor | Lhx2 | ||||||||
Model | LHX2_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 10 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nhTAATKAGn | ||||||||
Best auROC (human) | 0.814 | ||||||||
Best auROC (mouse) | 0.938 | ||||||||
Peak sets in benchmark (human) | 5 | ||||||||
Peak sets in benchmark (mouse) | 12 | ||||||||
Aligned words | 501 | ||||||||
TF family | HD-LIM factors {3.1.5} | ||||||||
TF subfamily | Lhx-2-like factors {3.1.5.3} | ||||||||
MGI | MGI:96785 | ||||||||
EntrezGene | GeneID:16870 (SSTAR profile) | ||||||||
UniProt ID | LHX2_MOUSE | ||||||||
UniProt AC | Q9Z0S2 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Lhx2 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 94.0 | 84.0 | 165.0 | 157.0 |
02 | 84.0 | 118.0 | 65.0 | 233.0 |
03 | 27.0 | 3.0 | 4.0 | 466.0 |
04 | 445.0 | 11.0 | 41.0 | 3.0 |
05 | 481.0 | 8.0 | 3.0 | 8.0 |
06 | 5.0 | 3.0 | 11.0 | 481.0 |
07 | 9.0 | 7.0 | 197.0 | 287.0 |
08 | 327.0 | 1.0 | 171.0 | 1.0 |
09 | 15.0 | 68.0 | 395.0 | 22.0 |
10 | 73.0 | 144.0 | 114.0 | 169.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.281 | -0.392 | 0.275 | 0.225 |
02 | -0.392 | -0.057 | -0.643 | 0.617 |
03 | -1.489 | -3.325 | -3.126 | 1.307 |
04 | 1.261 | -2.311 | -1.09 | -3.325 |
05 | 1.338 | -2.584 | -3.325 | -2.584 |
06 | -2.961 | -3.325 | -2.311 | 1.338 |
07 | -2.484 | -2.694 | 0.45 | 0.824 |
08 | 0.954 | -3.903 | 0.31 | -3.903 |
09 | -2.034 | -0.599 | 1.142 | -1.681 |
10 | -0.529 | 0.14 | -0.091 | 0.298 |