Model info
| Transcription factor | Lhx2 | ||||||||
| Model | LHX2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nhTAATKAGn | ||||||||
| Best auROC (human) | 0.814 | ||||||||
| Best auROC (mouse) | 0.938 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 12 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | HD-LIM factors {3.1.5} | ||||||||
| TF subfamily | Lhx-2-like factors {3.1.5.3} | ||||||||
| MGI | MGI:96785 | ||||||||
| EntrezGene | GeneID:16870 (SSTAR profile) | ||||||||
| UniProt ID | LHX2_MOUSE | ||||||||
| UniProt AC | Q9Z0S2 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Lhx2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 94.0 | 84.0 | 165.0 | 157.0 |
| 02 | 84.0 | 118.0 | 65.0 | 233.0 |
| 03 | 27.0 | 3.0 | 4.0 | 466.0 |
| 04 | 445.0 | 11.0 | 41.0 | 3.0 |
| 05 | 481.0 | 8.0 | 3.0 | 8.0 |
| 06 | 5.0 | 3.0 | 11.0 | 481.0 |
| 07 | 9.0 | 7.0 | 197.0 | 287.0 |
| 08 | 327.0 | 1.0 | 171.0 | 1.0 |
| 09 | 15.0 | 68.0 | 395.0 | 22.0 |
| 10 | 73.0 | 144.0 | 114.0 | 169.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.281 | -0.392 | 0.275 | 0.225 |
| 02 | -0.392 | -0.057 | -0.643 | 0.617 |
| 03 | -1.489 | -3.325 | -3.126 | 1.307 |
| 04 | 1.261 | -2.311 | -1.09 | -3.325 |
| 05 | 1.338 | -2.584 | -3.325 | -2.584 |
| 06 | -2.961 | -3.325 | -2.311 | 1.338 |
| 07 | -2.484 | -2.694 | 0.45 | 0.824 |
| 08 | 0.954 | -3.903 | 0.31 | -3.903 |
| 09 | -2.034 | -0.599 | 1.142 | -1.681 |
| 10 | -0.529 | 0.14 | -0.091 | 0.298 |