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Model info
Transcription factorLhx3
ModelLHX3_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
C
Motif rank
0
ConsensushhdhnbTAATKRvd
Best auROC (human)
Best auROC (mouse)0.951
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)2
Aligned words387
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-3-like factors {3.1.5.4}
MGIMGI:102673
EntrezGeneGeneID:16871
(SSTAR profile)
UniProt IDLHX3_MOUSE
UniProt ACP50481
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 12.038060000000002
0.0005 13.273965
0.0001 15.468865000000001
GTEx tissue expression atlas Lhx3 expression
Motifs in JASPAR
MA0135.1 (Lhx3; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
016.016.011.049.06.011.02.062.010.016.07.014.025.032.017.088.0
0216.03.016.012.022.011.02.040.013.04.08.012.041.029.034.0109.0
0341.017.018.016.017.08.04.018.025.020.08.07.067.036.027.043.0
0436.024.053.037.030.016.06.029.020.011.020.06.012.017.046.09.0
050.045.036.017.05.038.01.024.08.072.015.030.01.017.021.042.0
060.00.00.014.045.00.00.0127.011.00.00.062.015.00.00.098.0
0742.00.029.00.00.00.00.00.00.00.00.00.0199.00.0102.00.0
08240.00.00.01.00.00.00.00.0129.01.01.00.00.00.00.00.0
091.00.035.0333.00.00.00.01.00.00.00.01.00.00.00.01.0
100.00.00.01.00.00.00.00.00.00.04.031.04.00.0132.0200.0
111.00.02.01.00.00.00.00.074.013.045.04.0113.06.0107.06.0
1276.033.071.08.015.02.02.00.052.060.036.06.05.02.04.00.0
1366.010.027.045.025.020.03.049.039.022.024.028.02.04.05.03.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.311-0.367-0.7310.737-1.311-0.731-2.2990.971-0.823-0.367-1.165-0.4970.0710.315-0.3071.319
02-0.367-1.947-0.367-0.647-0.054-0.731-2.2990.536-0.569-1.687-1.037-0.6470.560.2180.3751.533
030.56-0.307-0.251-0.367-0.307-1.037-1.687-0.2510.071-0.148-1.037-1.1651.0480.4320.1470.608
040.4320.0310.8150.4590.251-0.367-1.3110.218-0.148-0.731-0.148-1.311-0.647-0.3070.675-0.925
05-4.1570.6530.432-0.307-1.4810.485-2.8470.031-1.0371.12-0.430.251-2.847-0.307-0.10.584
06-4.157-4.157-4.157-0.4970.653-4.157-4.1571.685-0.731-4.157-4.1570.971-0.43-4.157-4.1571.427
070.584-4.1570.218-4.157-4.157-4.157-4.157-4.157-4.157-4.157-4.157-4.1572.133-4.1571.467-4.157
082.32-4.157-4.157-2.847-4.157-4.157-4.157-4.1571.701-2.847-2.847-4.157-4.157-4.157-4.157-4.157
09-2.847-4.1570.4042.647-4.157-4.157-4.157-2.847-4.157-4.157-4.157-2.847-4.157-4.157-4.157-2.847
10-4.157-4.157-4.157-2.847-4.157-4.157-4.157-4.157-4.157-4.157-1.6870.284-1.687-4.1571.7242.138
11-2.847-4.157-2.299-2.847-4.157-4.157-4.157-4.1571.147-0.5690.653-1.6871.569-1.3111.514-1.311
121.1730.3461.106-1.037-0.43-2.299-2.299-4.1570.7960.9380.432-1.311-1.481-2.299-1.687-4.157
131.033-0.8230.1470.6530.071-0.148-1.9470.7370.511-0.0540.0310.183-2.299-1.687-1.481-1.947