We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLhx3
ModelLHX3_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
C
Motif rank
0
ConsensushhdhnbTAATKRvd
Best auROC (human)
Best auROC (mouse)0.951
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)2
Aligned words387
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-3-like factors {3.1.5.4}
MGIMGI:102673
EntrezGeneGeneID:16871
(SSTAR profile)
UniProt IDLHX3_MOUSE
UniProt ACP50481
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 12.038060000000002
0.0005 13.273965
0.0001 15.468865000000001
GTEx tissue expression atlas Lhx3 expression
Motifs in JASPAR
MA0135.1 (Lhx3; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
016.016.011.049.06.011.02.062.010.016.07.014.025.032.017.088.0
0216.03.016.012.022.011.02.040.013.04.08.012.041.029.034.0109.0
0341.017.018.016.017.08.04.018.025.020.08.07.067.036.027.043.0
0436.024.053.037.030.016.06.029.020.011.020.06.012.017.046.09.0
050.045.036.017.05.038.01.024.08.072.015.030.01.017.021.042.0
060.00.00.014.045.00.00.0127.011.00.00.062.015.00.00.098.0
0742.00.029.00.00.00.00.00.00.00.00.00.0199.00.0102.00.0
08240.00.00.01.00.00.00.00.0129.01.01.00.00.00.00.00.0
091.00.035.0333.00.00.00.01.00.00.00.01.00.00.00.01.0
100.00.00.01.00.00.00.00.00.00.04.031.04.00.0132.0200.0
111.00.02.01.00.00.00.00.074.013.045.04.0113.06.0107.06.0
1276.033.071.08.015.02.02.00.052.060.036.06.05.02.04.00.0
1366.010.027.045.025.020.03.049.039.022.024.028.02.04.05.03.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.311-0.367-0.7310.737-1.311-0.731-2.2990.971-0.823-0.367-1.165-0.4970.0710.315-0.3071.319
02-0.367-1.947-0.367-0.647-0.054-0.731-2.2990.536-0.569-1.687-1.037-0.6470.560.2180.3751.533
030.56-0.307-0.251-0.367-0.307-1.037-1.687-0.2510.071-0.148-1.037-1.1651.0480.4320.1470.608
040.4320.0310.8150.4590.251-0.367-1.3110.218-0.148-0.731-0.148-1.311-0.647-0.3070.675-0.925
05-4.1570.6530.432-0.307-1.4810.485-2.8470.031-1.0371.12-0.430.251-2.847-0.307-0.10.584
06-4.157-4.157-4.157-0.4970.653-4.157-4.1571.685-0.731-4.157-4.1570.971-0.43-4.157-4.1571.427
070.584-4.1570.218-4.157-4.157-4.157-4.157-4.157-4.157-4.157-4.157-4.1572.133-4.1571.467-4.157
082.32-4.157-4.157-2.847-4.157-4.157-4.157-4.1571.701-2.847-2.847-4.157-4.157-4.157-4.157-4.157
09-2.847-4.1570.4042.647-4.157-4.157-4.157-2.847-4.157-4.157-4.157-2.847-4.157-4.157-4.157-2.847
10-4.157-4.157-4.157-2.847-4.157-4.157-4.157-4.157-4.157-4.157-1.6870.284-1.687-4.1571.7242.138
11-2.847-4.157-2.299-2.847-4.157-4.157-4.157-4.1571.147-0.5690.653-1.6871.569-1.3111.514-1.311
121.1730.3461.106-1.037-0.43-2.299-2.299-4.1570.7960.9380.432-1.311-1.481-2.299-1.687-4.157
131.033-0.8230.1470.6530.071-0.148-1.9470.7370.511-0.0540.0310.183-2.299-1.687-1.481-1.947