Transcription factor | Lhx3 | ||||||||
Model | LHX3_MOUSE.H11MO.0.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 9 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbTAATKRv | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.94 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 2 | ||||||||
Aligned words | 500 | ||||||||
TF family | HD-LIM factors {3.1.5} | ||||||||
TF subfamily | Lhx-3-like factors {3.1.5.4} | ||||||||
MGI | MGI:102673 | ||||||||
EntrezGene | GeneID:16871 (SSTAR profile) | ||||||||
UniProt ID | LHX3_MOUSE | ||||||||
UniProt AC | P50481 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Lhx3 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 113.0 | 117.0 | 162.0 | 106.0 |
02 | 34.0 | 275.0 | 65.0 | 124.0 |
03 | 121.0 | 3.0 | 3.0 | 371.0 |
04 | 315.0 | 1.0 | 180.0 | 2.0 |
05 | 448.0 | 33.0 | 10.0 | 7.0 |
06 | 10.0 | 1.0 | 55.0 | 432.0 |
07 | 6.0 | 0.0 | 215.0 | 277.0 |
08 | 242.0 | 22.0 | 224.0 | 10.0 |
09 | 221.0 | 150.0 | 117.0 | 10.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.096 | -0.061 | 0.26 | -0.159 |
02 | -1.266 | 0.786 | -0.639 | -0.004 |
03 | -0.028 | -3.321 | -3.321 | 1.084 |
04 | 0.921 | -3.9 | 0.365 | -3.569 |
05 | 1.272 | -1.294 | -2.39 | -2.69 |
06 | -2.39 | -3.9 | -0.802 | 1.235 |
07 | -2.815 | -4.397 | 0.541 | 0.793 |
08 | 0.659 | -1.677 | 0.582 | -2.39 |
09 | 0.568 | 0.184 | -0.061 | -2.39 |