We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLhx3
ModelLHX3_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
C
Motif rank
0
ConsensusnbTAATKRv
Best auROC (human)
Best auROC (mouse)0.94
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)2
Aligned words500
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-3-like factors {3.1.5.4}
MGIMGI:102673
EntrezGeneGeneID:16871
(SSTAR profile)
UniProt IDLHX3_MOUSE
UniProt ACP50481
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.817655
0.0005 6.2852049999999995
0.0001 6.947935
GTEx tissue expression atlas Lhx3 expression
Motifs in JASPAR
MA0135.1 (Lhx3; Mus musculus)
PCM
ACGT
01113.0117.0162.0106.0
0234.0275.065.0124.0
03121.03.03.0371.0
04315.01.0180.02.0
05448.033.010.07.0
0610.01.055.0432.0
076.00.0215.0277.0
08242.022.0224.010.0
09221.0150.0117.010.0
PWM
ACGT
01-0.096-0.0610.26-0.159
02-1.2660.786-0.639-0.004
03-0.028-3.321-3.3211.084
040.921-3.90.365-3.569
051.272-1.294-2.39-2.69
06-2.39-3.9-0.8021.235
07-2.815-4.3970.5410.793
080.659-1.6770.582-2.39
090.5680.184-0.061-2.39