We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLHX4
(GeneCards)
ModelLHX4_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusdnvYTAATKdn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1423
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-3-like factors {3.1.5.4}
HGNCHGNC:21734
EntrezGeneGeneID:89884
(SSTAR profile)
UniProt IDLHX4_HUMAN
UniProt ACQ969G2
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.152569999999999
0.0005 6.797585
0.0001 7.961335
GTEx tissue expression atlas LHX4 expression
ReMap ChIP-seq dataset list LHX4 datasets
Motifs in JASPAR
PCM
ACGT
01551.098.0314.0450.0
02501.75328.75281.75300.75
03535.25212.25538.25127.25
0496.0498.091.0728.0
059.01.02.01401.0
061393.00.020.00.0
071412.00.01.00.0
085.750.752.751403.75
09166.5119.5280.5846.5
10770.25105.25401.25136.25
11400.75272.75444.75294.75
PWM
ACGT
010.443-1.269-0.1170.241
020.349-0.071-0.225-0.16
030.414-0.5060.419-1.012
04-1.2890.342-1.3420.72
05-3.492-4.838-4.5341.374
061.368-5.277-2.79-5.277
071.382-5.277-4.838-5.277
08-3.849-4.931-4.3541.376
09-0.746-1.074-0.2290.871
100.777-1.1990.127-0.945
110.126-0.2570.229-0.18