Model info
| Transcription factor | LHX4 (GeneCards) | ||||||||
| Model | LHX4_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dnvYTAATKdn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1423 | ||||||||
| TF family | HD-LIM factors {3.1.5} | ||||||||
| TF subfamily | Lhx-3-like factors {3.1.5.4} | ||||||||
| HGNC | HGNC:21734 | ||||||||
| EntrezGene | GeneID:89884 (SSTAR profile) | ||||||||
| UniProt ID | LHX4_HUMAN | ||||||||
| UniProt AC | Q969G2 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | LHX4 expression | ||||||||
| ReMap ChIP-seq dataset list | LHX4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 551.0 | 98.0 | 314.0 | 450.0 |
| 02 | 501.75 | 328.75 | 281.75 | 300.75 |
| 03 | 535.25 | 212.25 | 538.25 | 127.25 |
| 04 | 96.0 | 498.0 | 91.0 | 728.0 |
| 05 | 9.0 | 1.0 | 2.0 | 1401.0 |
| 06 | 1393.0 | 0.0 | 20.0 | 0.0 |
| 07 | 1412.0 | 0.0 | 1.0 | 0.0 |
| 08 | 5.75 | 0.75 | 2.75 | 1403.75 |
| 09 | 166.5 | 119.5 | 280.5 | 846.5 |
| 10 | 770.25 | 105.25 | 401.25 | 136.25 |
| 11 | 400.75 | 272.75 | 444.75 | 294.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.443 | -1.269 | -0.117 | 0.241 |
| 02 | 0.349 | -0.071 | -0.225 | -0.16 |
| 03 | 0.414 | -0.506 | 0.419 | -1.012 |
| 04 | -1.289 | 0.342 | -1.342 | 0.72 |
| 05 | -3.492 | -4.838 | -4.534 | 1.374 |
| 06 | 1.368 | -5.277 | -2.79 | -5.277 |
| 07 | 1.382 | -5.277 | -4.838 | -5.277 |
| 08 | -3.849 | -4.931 | -4.354 | 1.376 |
| 09 | -0.746 | -1.074 | -0.229 | 0.871 |
| 10 | 0.777 | -1.199 | 0.127 | -0.945 |
| 11 | 0.126 | -0.257 | 0.229 | -0.18 |