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Model info
Transcription factorLHX6
(GeneCards)
ModelLHX6_HUMAN.H11DI.0.D
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
D
Motif rank
0
ConsensusnbYTGATTRvn
Best auROC (human)0.337
Best auROC (mouse)0.932
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)2
Aligned words445
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-6-like factors {3.1.5.5}
HGNCHGNC:21735
EntrezGeneGeneID:26468
(SSTAR profile)
UniProt IDLHX6_HUMAN
UniProt ACQ9UPM6
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.905339999999999
0.0005 13.056515000000001
0.0001 16.4803
GTEx tissue expression atlas LHX6 expression
ReMap ChIP-seq dataset list LHX6 datasets
Motifs in JASPAR
MA0658.1 (LHX6; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0110.025.036.032.021.016.012.059.012.031.021.039.08.028.059.035.0
021.033.013.04.05.047.06.042.07.093.07.021.07.079.024.055.0
030.00.00.020.02.00.00.0250.00.00.00.050.00.00.01.0121.0
040.00.02.00.00.00.00.00.00.00.01.00.048.01.0392.00.0
0548.00.00.00.01.00.00.00.0393.00.02.00.00.00.00.00.0
060.04.01.0437.00.00.00.00.00.00.00.02.00.00.00.00.0
070.00.00.00.00.00.00.04.00.00.00.01.01.00.017.0421.0
080.00.01.00.00.00.00.00.016.00.01.00.0242.00.0175.09.0
0961.077.0103.017.00.00.00.00.023.0100.039.015.03.04.02.00.0
1015.028.023.021.078.031.015.057.032.054.033.025.08.02.08.014.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.997-0.1030.2570.141-0.274-0.541-0.8210.747-0.8210.109-0.2740.336-1.2110.0090.7470.229
02-3.0140.171-0.743-1.86-1.6540.521-1.4840.41-1.3381.2-1.338-0.274-1.3381.037-0.1430.677
03-4.302-4.302-4.302-0.322-2.469-4.302-4.3022.186-4.302-4.302-4.3020.583-4.302-4.302-3.0141.462
04-4.302-4.302-2.469-4.302-4.302-4.302-4.302-4.302-4.302-4.302-3.014-4.3020.542-3.0142.635-4.302
050.542-4.302-4.302-4.302-3.014-4.302-4.302-4.3022.638-4.302-2.469-4.302-4.302-4.302-4.302-4.302
06-4.302-1.86-3.0142.744-4.302-4.302-4.302-4.302-4.302-4.302-4.302-2.469-4.302-4.302-4.302-4.302
07-4.302-4.302-4.302-4.302-4.302-4.302-4.302-1.86-4.302-4.302-4.302-3.014-3.014-4.302-0.4812.707
08-4.302-4.302-3.014-4.302-4.302-4.302-4.302-4.302-0.541-4.302-3.014-4.3022.154-4.3021.83-1.098
090.781.0121.302-0.481-4.302-4.302-4.302-4.302-0.1851.2720.336-0.604-2.119-1.86-2.469-4.302
10-0.6040.009-0.185-0.2741.0250.109-0.6040.7130.1410.6590.171-0.103-1.211-2.469-1.211-0.671