Model info
| Transcription factor | LHX6 (GeneCards) | ||||||||
| Model | LHX6_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nnYTGATTRv | ||||||||
| Best auROC (human) | 0.567 | ||||||||
| Best auROC (mouse) | 0.95 | ||||||||
| Peak sets in benchmark (human) | 1 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 444 | ||||||||
| TF family | HD-LIM factors {3.1.5} | ||||||||
| TF subfamily | Lhx-6-like factors {3.1.5.5} | ||||||||
| HGNC | HGNC:21735 | ||||||||
| EntrezGene | GeneID:26468 (SSTAR profile) | ||||||||
| UniProt ID | LHX6_HUMAN | ||||||||
| UniProt AC | Q9UPM6 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | LHX6 expression | ||||||||
| ReMap ChIP-seq dataset list | LHX6 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 83.0 | 138.0 | 110.0 | 113.0 |
| 02 | 58.0 | 119.0 | 131.0 | 136.0 |
| 03 | 15.0 | 239.0 | 38.0 | 152.0 |
| 04 | 2.0 | 0.0 | 1.0 | 441.0 |
| 05 | 59.0 | 2.0 | 383.0 | 0.0 |
| 06 | 443.0 | 0.0 | 1.0 | 0.0 |
| 07 | 1.0 | 2.0 | 2.0 | 439.0 |
| 08 | 0.0 | 0.0 | 34.0 | 410.0 |
| 09 | 242.0 | 2.0 | 188.0 | 12.0 |
| 10 | 71.0 | 181.0 | 139.0 | 53.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.286 | 0.215 | -0.009 | 0.018 |
| 02 | -0.637 | 0.069 | 0.164 | 0.201 |
| 03 | -1.918 | 0.76 | -1.046 | 0.311 |
| 04 | -3.464 | -4.302 | -3.797 | 1.369 |
| 05 | -0.62 | -3.464 | 1.229 | -4.302 |
| 06 | 1.374 | -4.302 | -3.797 | -4.302 |
| 07 | -3.797 | -3.464 | -3.464 | 1.365 |
| 08 | -4.302 | -4.302 | -1.153 | 1.297 |
| 09 | 0.772 | -3.464 | 0.521 | -2.119 |
| 10 | -0.439 | 0.484 | 0.222 | -0.725 |