We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLHX6
(GeneCards)
ModelLHX6_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
D
Motif rank
0
ConsensusnnYTGATTRv
Best auROC (human)0.567
Best auROC (mouse)0.95
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)2
Aligned words444
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-6-like factors {3.1.5.5}
HGNCHGNC:21735
EntrezGeneGeneID:26468
(SSTAR profile)
UniProt IDLHX6_HUMAN
UniProt ACQ9UPM6
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.65315
0.0005 6.625785
0.0001 8.109895
GTEx tissue expression atlas LHX6 expression
ReMap ChIP-seq dataset list LHX6 datasets
Motifs in JASPAR
PCM
ACGT
0183.0138.0110.0113.0
0258.0119.0131.0136.0
0315.0239.038.0152.0
042.00.01.0441.0
0559.02.0383.00.0
06443.00.01.00.0
071.02.02.0439.0
080.00.034.0410.0
09242.02.0188.012.0
1071.0181.0139.053.0
PWM
ACGT
01-0.2860.215-0.0090.018
02-0.6370.0690.1640.201
03-1.9180.76-1.0460.311
04-3.464-4.302-3.7971.369
05-0.62-3.4641.229-4.302
061.374-4.302-3.797-4.302
07-3.797-3.464-3.4641.365
08-4.302-4.302-1.1531.297
090.772-3.4640.521-2.119
10-0.4390.4840.222-0.725