Model info
| Transcription factor | LMX1B (GeneCards) | ||||||||
| Model | LMX1B_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 18 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TAATTAAYWvvbWhWWWW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 35 | ||||||||
| TF family | HD-LIM factors {3.1.5} | ||||||||
| TF subfamily | Lmx {3.1.5.6} | ||||||||
| HGNC | HGNC:6654 | ||||||||
| EntrezGene | GeneID:4010 (SSTAR profile) | ||||||||
| UniProt ID | LMX1B_HUMAN | ||||||||
| UniProt AC | O60663 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | LMX1B expression | ||||||||
| ReMap ChIP-seq dataset list | LMX1B datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.381 | 2.167 | 1.381 | 25.01 |
| 02 | 27.369 | 0.594 | 0.594 | 1.381 |
| 03 | 26.185 | 0.197 | 0.197 | 3.361 |
| 04 | 0.983 | 2.575 | 0.197 | 26.185 |
| 05 | 0.0 | 1.592 | 0.0 | 28.347 |
| 06 | 29.939 | 0.0 | 0.0 | 0.0 |
| 07 | 23.629 | 4.737 | 1.573 | 0.0 |
| 08 | 7.077 | 9.437 | 0.0 | 13.425 |
| 09 | 10.223 | 0.0 | 2.378 | 17.338 |
| 10 | 10.223 | 5.505 | 11.066 | 3.146 |
| 11 | 12.601 | 11.047 | 3.932 | 2.359 |
| 12 | 4.718 | 9.455 | 4.737 | 11.028 |
| 13 | 5.505 | 3.146 | 1.573 | 19.716 |
| 14 | 10.242 | 3.951 | 2.378 | 13.368 |
| 15 | 16.144 | 1.989 | 0.398 | 11.407 |
| 16 | 13.785 | 0.398 | 0.398 | 15.358 |
| 17 | 10.836 | 0.594 | 1.381 | 17.127 |
| 18 | 9.643 | 2.565 | 2.565 | 15.166 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.318 | -1.016 | -1.318 | 1.132 |
| 02 | 1.22 | -1.753 | -1.753 | -1.318 |
| 03 | 1.177 | -2.075 | -2.075 | -0.683 |
| 04 | -1.515 | -0.889 | -2.075 | 1.177 |
| 05 | -2.283 | -1.228 | -2.283 | 1.254 |
| 06 | 1.307 | -2.283 | -2.283 | -2.283 |
| 07 | 1.077 | -0.4 | -1.236 | -2.283 |
| 08 | -0.05 | 0.21 | -2.283 | 0.538 |
| 09 | 0.284 | -2.283 | -0.949 | 0.78 |
| 10 | 0.284 | -0.271 | 0.357 | -0.735 |
| 11 | 0.479 | 0.356 | -0.556 | -0.954 |
| 12 | -0.403 | 0.212 | -0.4 | 0.354 |
| 13 | -0.271 | -0.735 | -1.236 | 0.903 |
| 14 | 0.286 | -0.552 | -0.949 | 0.534 |
| 15 | 0.712 | -1.077 | -1.899 | 0.386 |
| 16 | 0.563 | -1.899 | -1.899 | 0.665 |
| 17 | 0.338 | -1.753 | -1.318 | 0.769 |
| 18 | 0.23 | -0.892 | -0.892 | 0.653 |