We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLYL1
(GeneCards)
ModelLYL1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnhYWbCTSbbnhn
Best auROC (human)0.884
Best auROC (mouse)0.854
Peak sets in benchmark (human)23
Peak sets in benchmark (mouse)3
Aligned words476
TF familyTal-related factors {1.2.3}
TF subfamilyTal / HEN-like factors {1.2.3.1}
HGNCHGNC:6734
EntrezGeneGeneID:4066
(SSTAR profile)
UniProt IDLYL1_HUMAN
UniProt ACP12980
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.91066
0.0005 11.94061
0.0001 13.861925
GTEx tissue expression atlas LYL1 expression
ReMap ChIP-seq dataset list LYL1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0139.061.020.022.028.049.02.050.011.064.023.030.016.033.019.09.0
028.066.012.08.021.0111.05.070.05.041.02.016.04.028.03.076.0
0310.04.08.016.0180.09.015.042.08.00.01.013.066.01.016.087.0
0412.012.077.0163.02.02.01.09.02.018.08.012.03.086.024.045.0
050.019.00.00.00.0118.00.00.00.0107.01.02.00.0220.07.02.0
060.00.00.00.01.01.02.0460.00.00.00.08.00.00.00.04.0
070.00.01.00.00.00.01.00.00.00.02.00.05.057.0364.046.0
082.00.00.03.07.023.00.027.019.0133.078.0138.01.019.04.022.0
093.05.05.016.040.029.07.099.013.025.021.023.017.041.046.086.0
1024.015.019.015.016.035.04.045.05.026.023.025.044.043.042.095.0
1134.026.08.021.034.048.07.030.016.028.013.031.015.089.036.040.0
1223.019.043.014.036.097.07.051.09.018.023.014.08.033.044.037.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.2680.711-0.391-0.297-0.060.494-2.5360.514-0.9730.759-0.2540.008-0.6090.102-0.441-1.167
02-1.2790.79-0.889-1.279-0.3431.307-1.7220.848-1.7220.317-2.536-0.609-1.927-0.06-2.1860.93
03-1.065-1.927-1.279-0.6091.789-1.167-0.6720.341-1.279-4.359-3.08-0.8120.79-3.08-0.6091.065
04-0.889-0.8890.9431.69-2.536-2.536-3.08-1.167-2.536-0.494-1.279-0.889-2.1861.053-0.2120.409
05-4.359-0.441-4.359-4.359-4.3591.368-4.359-4.359-4.3591.271-3.08-2.536-4.3591.99-1.406-2.536
06-4.359-4.359-4.359-4.359-3.08-3.08-2.5362.726-4.359-4.359-4.359-1.279-4.359-4.359-4.359-1.927
07-4.359-4.359-3.08-4.359-4.359-4.359-3.08-4.359-4.359-4.359-2.536-4.359-1.7220.6442.4930.431
08-2.536-4.359-4.359-2.186-1.406-0.254-4.359-0.096-0.4411.4880.9561.524-3.08-0.441-1.927-0.297
09-2.186-1.722-1.722-0.6090.293-0.025-1.4061.193-0.812-0.172-0.343-0.254-0.550.3170.4311.053
10-0.212-0.672-0.441-0.672-0.6090.161-1.9270.409-1.722-0.133-0.254-0.1720.3870.3640.3411.152
110.132-0.133-1.279-0.3430.1320.473-1.4060.008-0.609-0.06-0.8120.041-0.6721.0870.1880.293
12-0.254-0.4410.364-0.7390.1881.173-1.4060.534-1.167-0.494-0.254-0.739-1.2790.1020.3870.216