Check the newest release v13
Model info
Transcription factorLYL1
(GeneCards)
ModelLYL1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnhYWbCTSbbnhn
Best auROC (human)0.884
Best auROC (mouse)0.854
Peak sets in benchmark (human)23
Peak sets in benchmark (mouse)3
Aligned words476
TF familyTal-related factors {1.2.3}
TF subfamilyTal / HEN-like factors {1.2.3.1}
HGNCHGNC:6734
EntrezGeneGeneID:4066
(SSTAR profile)
UniProt IDLYL1_HUMAN
UniProt ACP12980
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.91066
0.0005 11.94061
0.0001 13.861925
GTEx tissue expression atlas LYL1 expression
ReMap ChIP-seq dataset list LYL1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0139.061.020.022.028.049.02.050.011.064.023.030.016.033.019.09.0
028.066.012.08.021.0111.05.070.05.041.02.016.04.028.03.076.0
0310.04.08.016.0180.09.015.042.08.00.01.013.066.01.016.087.0
0412.012.077.0163.02.02.01.09.02.018.08.012.03.086.024.045.0
050.019.00.00.00.0118.00.00.00.0107.01.02.00.0220.07.02.0
060.00.00.00.01.01.02.0460.00.00.00.08.00.00.00.04.0
070.00.01.00.00.00.01.00.00.00.02.00.05.057.0364.046.0
082.00.00.03.07.023.00.027.019.0133.078.0138.01.019.04.022.0
093.05.05.016.040.029.07.099.013.025.021.023.017.041.046.086.0
1024.015.019.015.016.035.04.045.05.026.023.025.044.043.042.095.0
1134.026.08.021.034.048.07.030.016.028.013.031.015.089.036.040.0
1223.019.043.014.036.097.07.051.09.018.023.014.08.033.044.037.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.2680.711-0.391-0.297-0.060.494-2.5360.514-0.9730.759-0.2540.008-0.6090.102-0.441-1.167
02-1.2790.79-0.889-1.279-0.3431.307-1.7220.848-1.7220.317-2.536-0.609-1.927-0.06-2.1860.93
03-1.065-1.927-1.279-0.6091.789-1.167-0.6720.341-1.279-4.359-3.08-0.8120.79-3.08-0.6091.065
04-0.889-0.8890.9431.69-2.536-2.536-3.08-1.167-2.536-0.494-1.279-0.889-2.1861.053-0.2120.409
05-4.359-0.441-4.359-4.359-4.3591.368-4.359-4.359-4.3591.271-3.08-2.536-4.3591.99-1.406-2.536
06-4.359-4.359-4.359-4.359-3.08-3.08-2.5362.726-4.359-4.359-4.359-1.279-4.359-4.359-4.359-1.927
07-4.359-4.359-3.08-4.359-4.359-4.359-3.08-4.359-4.359-4.359-2.536-4.359-1.7220.6442.4930.431
08-2.536-4.359-4.359-2.186-1.406-0.254-4.359-0.096-0.4411.4880.9561.524-3.08-0.441-1.927-0.297
09-2.186-1.722-1.722-0.6090.293-0.025-1.4061.193-0.812-0.172-0.343-0.254-0.550.3170.4311.053
10-0.212-0.672-0.441-0.672-0.6090.161-1.9270.409-1.722-0.133-0.254-0.1720.3870.3640.3411.152
110.132-0.133-1.279-0.3430.1320.473-1.4060.008-0.609-0.06-0.8120.041-0.6721.0870.1880.293
12-0.254-0.4410.364-0.7390.1881.173-1.4060.534-1.167-0.494-0.254-0.739-1.2790.1020.3870.216