We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLYL1
(GeneCards)
ModelLYL1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusvMWbMTGYbhYbbb
Best auROC (human)0.852
Best auROC (mouse)0.808
Peak sets in benchmark (human)23
Peak sets in benchmark (mouse)3
Aligned words453
TF familyTal-related factors {1.2.3}
TF subfamilyTal / HEN-like factors {1.2.3.1}
HGNCHGNC:6734
EntrezGeneGeneID:4066
(SSTAR profile)
UniProt IDLYL1_HUMAN
UniProt ACP12980
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.323510000000001
0.0005 5.93821
0.0001 7.18261
GTEx tissue expression atlas LYL1 expression
ReMap ChIP-seq dataset list LYL1 datasets
Motifs in JASPAR
PCM
ACGT
0193.0200.092.068.0
0266.0315.012.060.0
03290.023.021.0119.0
0426.057.0222.0148.0
0559.0331.020.043.0
0648.00.03.0402.0
071.080.0367.05.0
083.0135.082.0233.0
0928.094.0100.0231.0
1094.0100.059.0200.0
1120.0232.054.0147.0
1243.0263.050.097.0
1364.085.082.0222.0
1454.0124.0172.0103.0
PWM
ACGT
01-0.1940.563-0.205-0.501
02-0.531.014-2.138-0.624
030.932-1.543-1.6280.049
04-1.428-0.6730.6670.264
05-0.641.064-1.674-0.947
06-0.84-4.318-3.2331.257
07-3.815-0.3421.167-2.867
08-3.2330.174-0.3180.715
09-1.358-0.184-0.1230.706
10-0.184-0.123-0.640.563
11-1.6740.71-0.7260.258
12-0.9470.835-0.801-0.153
13-0.561-0.283-0.3180.667
14-0.7260.090.413-0.094