Model info
| Transcription factor | Mafa | ||||||||
| Model | MAFA_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bTGCTGMbdbdbb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.799 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Maf-related factors {1.1.3} | ||||||||
| TF subfamily | Large Maf factors {1.1.3.1} | ||||||||
| MGI | MGI:2673307 | ||||||||
| EntrezGene | GeneID:378435 (SSTAR profile) | ||||||||
| UniProt ID | MAFA_MOUSE | ||||||||
| UniProt AC | Q8CF90 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Mafa expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 48.0 | 183.0 | 96.0 | 173.0 |
| 02 | 36.0 | 56.0 | 6.0 | 402.0 |
| 03 | 7.0 | 10.0 | 423.0 | 60.0 |
| 04 | 16.0 | 460.0 | 10.0 | 14.0 |
| 05 | 6.0 | 5.0 | 4.0 | 485.0 |
| 06 | 4.0 | 27.0 | 434.0 | 35.0 |
| 07 | 379.0 | 62.0 | 16.0 | 43.0 |
| 08 | 28.0 | 266.0 | 144.0 | 62.0 |
| 09 | 87.0 | 63.0 | 69.0 | 281.0 |
| 10 | 56.0 | 247.0 | 87.0 | 110.0 |
| 11 | 192.0 | 35.0 | 70.0 | 203.0 |
| 12 | 58.0 | 75.0 | 269.0 | 98.0 |
| 13 | 31.0 | 195.0 | 103.0 | 171.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.938 | 0.377 | -0.26 | 0.322 |
| 02 | -1.215 | -0.788 | -2.819 | 1.16 |
| 03 | -2.694 | -2.394 | 1.21 | -0.721 |
| 04 | -1.975 | 1.294 | -2.394 | -2.096 |
| 05 | -2.819 | -2.961 | -3.126 | 1.347 |
| 06 | -3.126 | -1.489 | 1.236 | -1.242 |
| 07 | 1.101 | -0.689 | -1.975 | -1.044 |
| 08 | -1.454 | 0.749 | 0.14 | -0.689 |
| 09 | -0.357 | -0.673 | -0.584 | 0.803 |
| 10 | -0.788 | 0.675 | -0.357 | -0.126 |
| 11 | 0.425 | -1.242 | -0.57 | 0.48 |
| 12 | -0.754 | -0.503 | 0.76 | -0.24 |
| 13 | -1.358 | 0.44 | -0.191 | 0.31 |