We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMBD2
(GeneCards)
ModelMBD2_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length11
Quality
B
Motif rank
0
ConsensusnSGGCCGGMKv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words113
TF family
TF subfamily
HGNCHGNC:6917
EntrezGeneGeneID:8932
(SSTAR profile)
UniProt IDMBD2_HUMAN
UniProt ACQ9UBB5
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.8516
0.0005 2.75471
0.0001 4.512865
GTEx tissue expression atlas MBD2 expression
ReMap ChIP-seq dataset list MBD2 datasets
Motifs in JASPAR
PCM
ACGT
0116.77844.41344.4134.935
025.92243.42651.3229.87
030.027.63582.9040.0
040.00.057.24353.295
050.0110.5390.00.0
060.0110.5390.00.0
070.00.0110.5390.0
080.00.0110.5390.0
0959.21739.47811.8430.0
1011.84311.84365.13921.713
1135.5313.81753.2957.896
PWM
ACGT
01-0.4730.4590.459-1.551
02-1.4010.4370.6-0.959
03-3.1980.01.071-3.198
04-3.198-3.1980.7070.637
05-3.1981.355-3.198-3.198
06-3.1981.355-3.198-3.198
07-3.198-3.1981.355-3.198
08-3.198-3.1981.355-3.198
090.740.344-0.794-3.198
10-0.794-0.7940.834-0.23
110.242-0.6530.637-1.156