MBD2_HUMAN.H11MO.0.B motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

MBD2
(GeneCards)

Model

MBD2_HUMAN.H11MO.0.B

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

11

Quality

B

Motif rank

0

Consensus

nSGGCCGGMKv

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

113

TF family

TF subfamily

HGNC

EntrezGene

GeneID:8932
(SSTAR profile)

UniProt ID

UniProt AC

Q9UBB5
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	1.8516
0.0005	2.75471
0.0001	4.512865

GTEx tissue expression atlas

MBD2 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

PCM

	A	C	G	T
01	16.778	44.413	44.413	4.935
02	5.922	43.426	51.322	9.87
03	0.0	27.635	82.904	0.0
04	0.0	0.0	57.243	53.295
05	0.0	110.539	0.0	0.0
06	0.0	110.539	0.0	0.0
07	0.0	0.0	110.539	0.0
08	0.0	0.0	110.539	0.0
09	59.217	39.478	11.843	0.0
10	11.843	11.843	65.139	21.713
11	35.53	13.817	53.295	7.896

PWM

	A	C	G	T
01	-0.473	0.459	0.459	-1.551
02	-1.401	0.437	0.6	-0.959
03	-3.198	0.0	1.071	-3.198
04	-3.198	-3.198	0.707	0.637
05	-3.198	1.355	-3.198	-3.198
06	-3.198	1.355	-3.198	-3.198
07	-3.198	-3.198	1.355	-3.198
08	-3.198	-3.198	1.355	-3.198
09	0.74	0.344	-0.794	-3.198
10	-0.794	-0.794	0.834	-0.23
11	0.242	-0.653	0.637	-1.156