We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMEF2A
(GeneCards)
ModelMEF2A_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusndbYTATTTWWRKnn
Best auROC (human)0.95
Best auROC (mouse)0.981
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)6
Aligned words498
TF familyRegulators of differentiation {5.1.1}
TF subfamilyMEF-2 {5.1.1.1}
HGNCHGNC:6993
EntrezGeneGeneID:4205
(SSTAR profile)
UniProt IDMEF2A_HUMAN
UniProt ACQ02078
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.37801
0.0005 12.266560000000002
0.0001 16.163415
GTEx tissue expression atlas MEF2A expression
ReMap ChIP-seq dataset list MEF2A datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0127.012.051.040.025.06.08.049.043.016.048.052.021.06.037.056.0
0211.019.057.029.08.04.06.022.015.09.072.048.012.015.089.081.0
030.040.01.05.00.032.01.014.013.0167.07.037.04.0133.012.031.0
040.01.00.016.05.08.00.0359.00.01.00.020.00.08.00.079.0
054.00.00.01.017.00.01.00.00.00.00.00.0444.00.015.015.0
0641.04.02.0418.00.00.00.00.03.00.01.012.03.00.00.013.0
079.00.03.035.00.00.00.04.01.00.00.02.033.07.011.0392.0
080.00.00.043.00.00.00.07.00.00.00.014.024.012.04.0393.0
0911.04.01.08.01.00.00.011.00.00.00.04.086.044.03.0324.0
107.01.07.083.011.01.06.030.00.02.00.02.035.08.027.0277.0
1118.00.035.00.09.01.02.00.09.00.030.01.0281.04.0100.07.0
1246.018.0221.032.01.03.00.01.08.09.0122.028.00.02.02.04.0
1323.027.03.02.017.010.00.05.0121.0158.034.032.08.045.07.05.0
1465.036.036.032.057.081.014.088.05.08.07.024.012.08.09.015.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.138-0.9320.4910.25-0.214-1.594-1.3220.4510.322-0.6520.4310.51-0.386-1.5940.1730.584
02-1.016-0.4840.601-0.068-1.322-1.97-1.594-0.34-0.715-1.2090.8340.431-0.932-0.7151.0450.951
03-4.3950.25-3.121-1.764-4.3950.029-3.121-0.782-0.8541.672-1.4490.173-1.971.445-0.932-0.002
04-4.395-3.121-4.395-0.652-1.764-1.322-4.3952.436-4.395-3.121-4.395-0.433-4.395-1.322-4.3950.926
05-1.97-4.395-4.395-3.121-0.593-4.395-3.121-4.395-4.395-4.395-4.395-4.3952.648-4.395-0.715-0.715
060.275-1.97-2.5782.588-4.395-4.395-4.395-4.395-2.228-4.395-3.121-0.932-2.228-4.395-4.395-0.854
07-1.209-4.395-2.2280.118-4.395-4.395-4.395-1.97-3.121-4.395-4.395-2.5780.06-1.449-1.0162.524
08-4.395-4.395-4.3950.322-4.395-4.395-4.395-1.449-4.395-4.395-4.395-0.782-0.254-0.932-1.972.526
09-1.016-1.97-3.121-1.322-3.121-4.395-4.395-1.016-4.395-4.395-4.395-1.971.010.345-2.2282.334
10-1.449-3.121-1.4490.975-1.016-3.121-1.594-0.034-4.395-2.578-4.395-2.5780.118-1.322-0.1382.177
11-0.537-4.3950.118-4.395-1.209-3.121-2.578-4.395-1.209-4.395-0.034-3.1212.191-1.971.161-1.449
120.389-0.5371.9520.029-3.121-2.228-4.395-3.121-1.322-1.2091.359-0.102-4.395-2.578-2.578-1.97
13-0.296-0.138-2.228-2.578-0.593-1.108-4.395-1.7641.3511.6170.0890.029-1.3220.367-1.449-1.764
140.7320.1460.1460.0290.6010.951-0.7821.033-1.764-1.322-1.449-0.254-0.932-1.322-1.209-0.715